Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E10
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    28   1.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    27   3.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.1  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    26   4.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.4  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   9.5  

>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 202 ESSSFWKHKRLPCLIISYRKYLXIQTPTHHSHI-FPXFCVNYKALIL 65
           +S+  WK   +P  II+Y+     Q   H + I FP F   Y  LI+
Sbjct: 54  QSTHAWKMHCMPTEIIAYQPIPVFQRLLHSNDIYFPYFQTRYTTLIM 100


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 394 IQSKALRIITGAMKSSPVTALQ-VECVDPPLHLRRQYLSDKFVFKSLQIQNNHIITK 227
           I+     ++ G +KSS    L  +E V+   +    +LS+K  FKSL++  NH +TK
Sbjct: 60  IRPAGTSVLLGRVKSSKANQLVGIEHVEGSRYALI-FLSEKLDFKSLKVIANHQLTK 115


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 28  LRNTHVKMNIPALKSMPYSLHKIXGKYESDELEFEXTNIFY 150
           L N     N+PA+   P  LH+     E++++++  T+I Y
Sbjct: 406 LANPIASSNVPAISLKPGELHESVFFSENEQIDYLLTSIDY 446


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 400 DSIQSKALRIITGAMKSSPVTALQVECV--DPPLHLRRQYLSDKFVFKSLQIQNNHIITK 227
           DS++SK  + +T    S  +T L  + +  D P  L  QY+  K     LQI N     +
Sbjct: 266 DSLKSKDSKPLT---MSEVLTQLPEDDIPFDDPFDLTSQYVKVKLKMLRLQIANKKNSEE 322

Query: 226 LKTXNELIES 197
             T N  +ES
Sbjct: 323 FSTLNLQLES 332


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/42 (21%), Positives = 26/42 (61%)
 Frame = -3

Query: 595 NGIQHCNYITNKCLSNMNILRSLAGVWWGAHPFNLKLLYNAI 470
           + ++ CN ++   ++++N   SLA  ++G+HP    +++ ++
Sbjct: 29  HSVEQCNQLSMYIIASVN---SLAEAFYGSHPEKYNIVFQSV 67


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 439  LLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVECVDPPLHLRRQYLSDK 275
            L+ PG    +  ++  Q    R+I   + +  +TA+ +EC+  P++ R   L+DK
Sbjct: 922  LVMPGVNERYGGVEPYQW-VYRVIQVFIYACILTAVIIECIATPIYERDHLLNDK 975


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 583 HCNYITNKCLSNMNILRSLAGVWWGAHPFNLKLLYNAIVRSVLDYG 446
           HC Y T + L  +  + S   V     P NL L  N  ++ V D+G
Sbjct: 139 HCQYFTYQILRALKAMHSAGVVHRDLKPSNLLLNANCDLK-VADFG 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,016
Number of Sequences: 5004
Number of extensions: 53375
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)