Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E10
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    32   0.34 
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    29   4.2  

>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 403 LDSIQSKALRIITGAMKSSPVTALQVECVDPPLHLRRQYLSDKF 272
           L  I +K+LR+IT A  SSPV+  + + +DP +  +  Y S  F
Sbjct: 187 LGVIDNKSLRLITDASVSSPVSREKAQGLDPSMREKVIYSSPNF 230


>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = -3

Query: 460 VLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVECVDPPLHLRRQYLS 281
           V+  G+   + G V  F    S Q KA    T   K +P T  Q  C   P  +      
Sbjct: 66  VIKRGSKKTEDGKVRYFTLACSRQGKAQYTSTNKFKPNPSTRQQ--C---PAKVNFYLHD 120

Query: 280 DKFVFKSLQIQNNHIITKLK 221
           +KF   +L + +NH+++  K
Sbjct: 121 EKFCISTLTLDHNHVVSPSK 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,543,575
Number of Sequences: 37544
Number of extensions: 282592
Number of successful extensions: 479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)