Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E10
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126198-1|AAI26199.1|  354|Homo sapiens opsin 5 protein.              33   1.2  
BC126194-1|AAI26195.1|  354|Homo sapiens opsin 5 protein.              33   1.2  
AY377391-1|AAR21109.1|  354|Homo sapiens neuropsin protein.            33   1.2  
AY288419-1|AAP72128.1|  350|Homo sapiens G protein-coupled recep...    33   1.2  
AL161622-1|CAI20454.1|  188|Homo sapiens protein ( Human DNA seq...    33   1.2  

>BC126198-1|AAI26199.1|  354|Homo sapiens opsin 5 protein.
          Length = 354

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 484 LYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVE 323
           +YN I+  V+DY     Q G + A KK  S++   L  +T   KSS V  +  E
Sbjct: 300 MYNPIIYQVIDYKFACCQTGGLKATKK-KSLEGFRLHTVTTVRKSSAVLEIHEE 352


>BC126194-1|AAI26195.1|  354|Homo sapiens opsin 5 protein.
          Length = 354

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 484 LYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVE 323
           +YN I+  V+DY     Q G + A KK  S++   L  +T   KSS V  +  E
Sbjct: 300 MYNPIIYQVIDYKFACCQTGGLKATKK-KSLEGFRLHTVTTVRKSSAVLEIHEE 352


>AY377391-1|AAR21109.1|  354|Homo sapiens neuropsin protein.
          Length = 354

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 484 LYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVE 323
           +YN I+  V+DY     Q G + A KK  S++   L  +T   KSS V  +  E
Sbjct: 300 MYNPIIYQVIDYKFACCQTGGLKATKK-KSLEGFRLHTVTTVRKSSAVLEIHEE 352


>AY288419-1|AAP72128.1|  350|Homo sapiens G protein-coupled receptor
           136 protein.
          Length = 350

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 484 LYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVE 323
           +YN I+  V+DY     Q G + A KK  S++   L  +T   KSS V  +  E
Sbjct: 297 MYNPIIYQVIDYKFACCQTGGLKATKK-KSLEGFRLHTVTTVRKSSAVLEIHEE 349


>AL161622-1|CAI20454.1|  188|Homo sapiens protein ( Human DNA
           sequence from clone RP3-402H5 on chromosome 6p12.3-21.1 
           Contains the 3' end of a gene for a novel protein
           similar to seven  ).
          Length = 188

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 484 LYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVE 323
           +YN I+  V+DY     Q G + A KK  S++   L  +T   KSS V  +  E
Sbjct: 135 MYNPIIYQVIDYKFACCQTGGLKATKK-KSLEGFRLHTVTTVRKSSAVLEIHEE 187


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,506,158
Number of Sequences: 237096
Number of extensions: 1720845
Number of successful extensions: 2359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2359
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)