Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E10
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    26   0.36 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    26   0.36 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    26   0.36 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    26   0.36 
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    25   0.48 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.63 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.5  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 514 TIHRQENARYSY----YSNTCL*CNYNVEF 591
           TIH   N +Y+Y    Y+N C    YN+ +
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 514 TIHRQENARYSY----YSNTCL*CNYNVEF 591
           TIH   N +Y+Y    Y+N C    YN+ +
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 514 TIHRQENARYSY----YSNTCL*CNYNVEF 591
           TIH   N +Y+Y    Y+N C    YN+ +
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +1

Query: 514 TIHRQENARYSY----YSNTCL*CNYNVEF 591
           TIH   N +Y+Y    Y+N C    YN+ +
Sbjct: 89  TIHNNNNYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 514 TIHRQENARYSYYSNTCL*CNYNVEF 591
           TIH   N +Y+ Y+N C    YN+ +
Sbjct: 89  TIHNNNNYKYN-YNNNCKKLYYNINY 113


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 514 TIHRQENARYSYYSNTCL*CNYNVEFHS 597
           TIH   N +Y+Y +N     NYN  +++
Sbjct: 322 TIHNNNNYKYNYNNNNYNNNNYNNNYNN 349


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -3

Query: 349 SPVTALQVECVDPPLHLRRQYLSDKFVFKSLQIQNNHIITKLKT 218
           +PV  L+    +PP+ +        F F+++Q   +    ++KT
Sbjct: 25  NPVQELKALFAEPPVRVSNGGKEQDFRFEAIQCLQSSAFKEIKT 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,604
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)