Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E10
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50720.1 68416.m05549 protein kinase, putative similar to pro...    29   3.5  
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)...    28   4.7  

>At3g50720.1 68416.m05549 protein kinase, putative similar to
           protein kinase ATN1 [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387
          Length = 377

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/61 (19%), Positives = 29/61 (47%)
 Frame = -3

Query: 487 LLYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRIITGAMKSSPVTALQVECVDPP 308
           ++Y   +++++     ++QPG  +A    D  Q +   ++  +MK   +      C++P 
Sbjct: 61  IVYKGRLKNIVPVAVKIVQPGKTSAVSIQDKQQFQKEVLVLSSMKHENIVRFVGACIEPQ 120

Query: 307 L 305
           L
Sbjct: 121 L 121


>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
           identical to SP|O24617 DNA mismatch repair protein MSH2
           (AtMsh2) {Arabidopsis thaliana}
          Length = 937

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -3

Query: 487 LLYNAIVRSVLDYGTFLLQPGDVNAFKKLDSIQSKALRII 368
           L ++ ++ +  +YG F ++  D+  F +LDS   +AL ++
Sbjct: 268 LSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALNVM 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,800
Number of Sequences: 28952
Number of extensions: 252869
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)