Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E09
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    29   0.29 
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.1  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   3.6  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   4.8  
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    25   6.3  

>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 263 RTVHRNH*LVRTLAKIFEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYE 406
           +T+H+    V++L KI EK C + ++   + K  F   + K  KE Y+
Sbjct: 89  QTIHKKISQVQSLLKIIEKKCSSDFL-EANVKSQFTTCENKDSKEDYQ 135


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 149 LDKASDRFRIFPNIYLNV 96
           +DKA+D+F + PN+ LN+
Sbjct: 11  IDKATDQFNLEPNLALNI 28


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 305 KIFEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYEPIKDSQ 424
           K F K   TQ   HF++KR+      K QK+  +  KD +
Sbjct: 274 KEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEE 313


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 311 FEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYEPIKDS 421
           FEK C      +F + +D  + ++ ++KE ++ +KD+
Sbjct: 355 FEKYCDNFKKNYFSKFKDSEITEDIVEKEYWKLVKDN 391


>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 311 FEKSCPTQWVTHFDRKRDFNVF 376
           ++  CP +WV  +D +R+   F
Sbjct: 58  YQSLCPMEWVERWDEQRENGTF 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,213
Number of Sequences: 5004
Number of extensions: 36632
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)