Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E09
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                29   2.1  
SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)                    27   8.6  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         27   8.6  
SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 224 EINTGSA*TLRISRTVHRNH*LVRTLAKIFEKSCPTQWVTHFDRKR 361
           E  TG A    +S   HR+H L   L  I+E+S P  W   FD  R
Sbjct: 392 ESGTGKATPSTMSTNAHRHHPLGHELRNIYERS-PLDW-NPFDHAR 435


>SB_28628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 290 VRTLAKIFEKSCPTQW 337
           +RTLA++ EK CP  W
Sbjct: 81  IRTLARLLEKRCPYHW 96


>SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 193 KEQRKKCWDARDKYWECLDSQN 258
           K+ + +C D   K+W CLD  N
Sbjct: 520 KQLKSECNDTFTKHWNCLDHNN 541


>SB_59483| Best HMM Match : DUF402 (HMM E-Value=3.8)
          Length = 796

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 342 VTHWVGQDFSNIFAKVRTS*WFL 274
           + HW+ +DFS IF +V    W L
Sbjct: 685 IPHWIWRDFSEIFVQVIHKIWNL 707


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 234 VFISGVPALFSLLFIRKGHPYXRKLKS 154
           +F+SG P LFS +F R   P   +L S
Sbjct: 236 LFVSGYPVLFSRVFPRSAQPRFIRLPS 262


>SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 342 VTHWVGQDFSNIFAKVRTS*WFL 274
           + HW+ +DFS IF +V    W L
Sbjct: 392 IPHWIWRDFSEIFVQVIHKIWNL 414


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,078
Number of Sequences: 59808
Number of extensions: 230444
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)