Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E09
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58005.1 68418.m07257 expressed protein                             27   7.0  
At5g22780.1 68418.m02663 adaptin family protein similar to SP|P1...    27   9.3  
At5g22770.3 68418.m02661 adaptin family protein similar to SP|P1...    27   9.3  
At5g22770.2 68418.m02660 adaptin family protein similar to SP|P1...    27   9.3  
At5g22770.1 68418.m02659 adaptin family protein similar to SP|P1...    27   9.3  
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    27   9.3  

>At5g58005.1 68418.m07257 expressed protein
          Length = 116

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 311 FEKSCPTQWVTHFDRKRDFNVFKEKMQKEGYE 406
           F  +C + WV HFDR+   N   +++  +G E
Sbjct: 66  FVNNCRSSWVKHFDREYCRNKRVQRLLDDGDE 97


>At5g22780.1 68418.m02663 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1013

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 PDKEQRKKCWDARDKYWECLD 249
           PD E +KK W    KY  C+D
Sbjct: 544 PDPELQKKVWAVFKKYESCID 564


>At5g22770.3 68418.m02661 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1012

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 PDKEQRKKCWDARDKYWECLD 249
           PD E +KK W    KY  C+D
Sbjct: 544 PDPELQKKVWAVFKKYESCID 564


>At5g22770.2 68418.m02660 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1012

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 PDKEQRKKCWDARDKYWECLD 249
           PD E +KK W    KY  C+D
Sbjct: 544 PDPELQKKVWAVFKKYESCID 564


>At5g22770.1 68418.m02659 adaptin family protein similar to
           SP|P18484 adaptor-related protein complex 2 alpha 2
           subunit (Alpha-adaptin C) (Clathrin assembly protein
           complex 2 alpha-C large chain) {Rattus norvegicus};
           contains Pfam profiles PF01602 Adaptin N terminal
           region, PF02883 Adaptin C-terminal domain
          Length = 1012

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 187 PDKEQRKKCWDARDKYWECLD 249
           PD E +KK W    KY  C+D
Sbjct: 544 PDPELQKKVWAVFKKYESCID 564


>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 302 AKIFEKSCPTQWVTHFDRKRDFNVF 376
           AK +   CP++WV  ++ +R+   F
Sbjct: 162 AKFYRSLCPSEWVDRWNEQRENGTF 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,785,496
Number of Sequences: 28952
Number of extensions: 170070
Number of successful extensions: 389
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)