Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E08
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 208 5e-55
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 204 1e-53
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.34
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 1.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.4
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 5.5
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 5.5
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.2
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.2
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 25 9.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 208 bits (508), Expect = 5e-55
Identities = 103/179 (57%), Positives = 129/179 (72%), Gaps = 2/179 (1%)
Frame = +3
Query: 123 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSSW 302
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAY NV+ ARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 303 RVISSIEQKTE--GSERKQQMAKEYRVKVQKELXXICYDVLGLLDKHLIPKASNPXSKVF 476
R++SSIEQK E G+ + ++ KEYR K+++EL IC D+L +L+KHLIP A++ SKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 477 YLKMKGDYYRYLAXVATGETXHSVVQDSXKAYQDAFEISKAKMQPTHPIRLGLALNFSV 653
Y KMKGDYYRYLA A GE S + Y+ A EI+ A++ PTHPIRLGLALNFSV
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSV 181
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 204 bits (497), Expect = 1e-53
Identities = 103/180 (57%), Positives = 129/180 (71%), Gaps = 2/180 (1%)
Frame = +3
Query: 120 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSS 299
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAY N++ ARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 300 WRVISSIEQKTE--GSERKQQMAKEYRVKVQKELXXICYDVLGLLDKHLIPKASNPXSKV 473
WR+ISSIEQK E G+ R+ + KEYR K++ EL IC+DVL +L+KHLIP A+ SKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 474 FYLKMKGDYYRYLAXVATGETXHSVVQDSXKAYQDAFEISKAKMQPTHPIRLGLALNFSV 653
FY KMKGDYYRYLA GE S +AY+ A +I+ A++ PT P+RLGLALNFSV
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSV 180
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 29.9 bits (64), Expect = 0.34
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = +3
Query: 102 PLPSSTMSVDKE--ELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXN 275
P+ S TMS E + R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2997 PIMSITMSDSSAYGEELMRERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 276 VVXARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVQKELXXIC 407
+R+ + +E+ + EY +++ L C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +1
Query: 13 FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 177
FS +E ILC L+L+V + ++ S+ + F +PR K N WPN+ S
Sbjct: 39 FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98
Query: 178 DM 183
+
Sbjct: 99 HL 100
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 152 TLHQFFLVDGHRGRWKRTNSLMPLSEGEKCI*TSKFKHNISFSLALNGY 6
TL FL DG RWK + S+ K +++ +LNGY
Sbjct: 52 TLKDEFLADGLESRWKTNGEKSSSIRYPLVMEFSQLKEDLTNRASLNGY 100
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 310 FPQLNRKPRVQKENSKWQKNIGLKYKRSSXKSATTFWAYLTNT*FLKLVI---XKVKCFT 480
F N + R + +QK + + K+ S + A+ F ++ + +KL+ K CF
Sbjct: 75 FIACNGQTRAVQSRGDYQKTLAIALKKFSLEDASKFIVCVSQSSRIKLITEEEFKQICFN 134
Query: 481 SK*KEITTGTLXKWPQEKP 537
S E L P+EKP
Sbjct: 135 SSSPE--RDRLIIVPKEKP 151
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +1
Query: 25 EKLILCLNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNW 162
EKL+ C HF +G+ + L RC +T CNVP W
Sbjct: 683 EKLVACTT-----HFY---EGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 67 FSPSDK-GISELVLFHRPRCPSTRKNWCNVPNWPNKLSDMTT 189
FSP +K + +L LFH + PS+++ V N + SD +T
Sbjct: 162 FSPPEKPSMKDLALFHGNKSPSSKETIPKVSN--SNSSDTST 201
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +3
Query: 360 AKEYRVKVQKELXXICYDVL--GLLDKHLIP 446
AK R Q +C D++ GL+DKHL P
Sbjct: 590 AKSIRKAKQNAAFIMCLDLIRMGLIDKHLKP 620
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 4 VYPFSAREKLILCLNLL 54
++PF EK++LCL LL
Sbjct: 92 IFPFELCEKIVLCLVLL 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,214
Number of Sequences: 5004
Number of extensions: 48460
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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