Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E07
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...   140   2e-34
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           29   0.68 
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        28   1.2  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   2.1  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    27   2.1  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   3.6  

>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score =  140 bits (338), Expect = 2e-34
 Identities = 67/139 (48%), Positives = 90/139 (64%)
 Frame = +3

Query: 177 LKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKD 356
           +K  WF E  +MWPG   + +VK+VL+  KSKYQ++ VF++ + G VLVLDG IQ T +D
Sbjct: 11  IKDGWFREINNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERD 70

Query: 357 XFSYQEMISFLPLCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKR 536
            FSYQEMI+ L L  H NP  VL+       V REV KH  V+  +L +ID+ VI++SK+
Sbjct: 71  EFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQ 130

Query: 537 YLPFMAVGFXSPKLNSSCG 593
           YLP M+ GF  PK+    G
Sbjct: 131 YLPEMSAGFNHPKVKVHIG 149


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 351 KDXFSYQEMISFLPLCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIEL 527
           K  ++Y+ M  F+P   H      +        +A  +AKH    H++   + D VIEL
Sbjct: 789 KGLYAYEHMFQFIPR--HTLAIQAICQAHRSYSMAVRLAKHWFYSHLLTDHVTDEVIEL 845


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/58 (20%), Positives = 26/58 (44%)
 Frame = +3

Query: 210 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMIS 383
           +W G  +   +K +L   K K  N+  FD   L  V+    +++ +  D +  +  ++
Sbjct: 55  LWDGHVWIGSLKNILIYLKQKGYNLDNFDAKQLANVMAFTSLLEGSVNDLWLLEAFVN 112


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 250 YCTQKNQNTRISKFLIQPVWGRFLSWTESYN 342
           +CTQK   + +SKF   P   R +  TE+ N
Sbjct: 20  FCTQKLHRSTVSKFFEHPTSKRSIGVTENGN 50


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 316 TFPKLVVSKTWIFWYFDFSVCSTSLTSNEKVPPGHISHDSVNQLV 182
           T  KLV ++    W      C  S  +N  + PG +    VNQL+
Sbjct: 310 TLAKLVATQCHRLWLVQSPSCPPSPKNNAHLSPGSMGGVKVNQLL 354


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 331 PSKTRTFPKLVVSKTWIFWY 272
           PS+T    K  V KTW +W+
Sbjct: 815 PSRTLIIDKACVEKTWPYWW 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,907
Number of Sequences: 5004
Number of extensions: 43304
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)