Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E07
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0034 - 12663290-12663355,12663437-12663566,12663903-126639... 138 4e-33
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 121 4e-28
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872... 120 7e-28
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777... 88 6e-18
10_08_0980 - 22002818-22003008,22003646-22003750,22003859-220039... 29 2.8
10_08_0120 + 14972010-14973197 28 6.5
>07_03_0034 -
12663290-12663355,12663437-12663566,12663903-12663990,
12664106-12664178,12666144-12666248,12667610-12667732,
12667821-12667897,12668877-12669006
Length = 263
Score = 138 bits (333), Expect = 4e-33
Identities = 63/135 (46%), Positives = 90/135 (66%)
Frame = +3
Query: 189 WFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSY 368
WF+E MWPG S +V++VL KS YQN+ VF +++ GKVLVLDG+IQ T +D +Y
Sbjct: 34 WFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAY 93
Query: 369 QEMISFLPLCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPF 548
QEMI+ LPLC K+P VL+ V REV++H V+ I + EID V+++SK++ P
Sbjct: 94 QEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVDVSKQFFPH 153
Query: 549 MAVGFXSPKLNSSCG 593
+AVGF P+++ G
Sbjct: 154 LAVGFEDPRVSLHIG 168
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 121 bits (292), Expect = 4e-28
Identities = 56/128 (43%), Positives = 83/128 (64%)
Frame = +3
Query: 210 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMISFL 389
MWPG S +V+ +L+ KS YQ I VF++++ G VLVLDGI+Q T KD +YQEM++ L
Sbjct: 75 MWPGEAHSLKVENILYQGKSPYQEILVFESSTYGNVLVLDGIVQLTEKDECAYQEMVTHL 134
Query: 390 PLCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFXS 569
PLC +P +VL+ V RE+A+H V++I + EID VI++ K + P ++VGF
Sbjct: 135 PLCSIPSPKSVLVVGGGDGGVLREIARHASVENIDICEIDQLVIDVCKDFFPQLSVGFKD 194
Query: 570 PKLNSSCG 593
P++ G
Sbjct: 195 PRVQLHVG 202
>02_02_0299 -
8726024-8726101,8726460-8726534,8726836-8726965,
8727406-8727601,8727894-8727965,8728087-8728159,
8728240-8728344,8728502-8728624,8728730-8728806,
8729064-8729108,8729214-8729433
Length = 397
Score = 120 bits (290), Expect = 7e-28
Identities = 56/128 (43%), Positives = 82/128 (64%)
Frame = +3
Query: 210 MWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMISFL 389
MWPG S +V+++L+ KS YQ + VF++++ GKVLVLDGI+Q T KD +YQEMI+ L
Sbjct: 86 MWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKVLVLDGIVQLTDKDECAYQEMITHL 145
Query: 390 PLCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFXS 569
PLC +P VL+ V RE+ +H V+ I + EID VI++ K + P ++VGF
Sbjct: 146 PLCSIPSPKKVLVIGGGDGGVLREICRHGSVESIDICEIDQLVIDVCKDFFPDLSVGFKD 205
Query: 570 PKLNSSCG 593
P++ G
Sbjct: 206 PRVRLHVG 213
>02_02_0206 -
7771835-7771913,7772083-7772219,7772364-7772422,
7772535-7772610,7772717-7772873,7773241-7773329,
7773648-7773750,7773919-7774013,7774301-7774367,
7774894-7775066
Length = 344
Score = 87.8 bits (208), Expect = 6e-18
Identities = 48/140 (34%), Positives = 67/140 (47%)
Frame = +3
Query: 159 KKXMDKLKTNWFTESCDMWPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 338
K+ + ++ W+ E D + + VLH SKYQ I + DT GK L++DG +
Sbjct: 31 KQQQREEESKWYEEEID--DDLKLCYALNSVLHRGASKYQEIALIDTKHFGKALIIDGKM 88
Query: 339 QCTXKDXFSYQEMISFLPLCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRV 518
Q T D F Y E + PL H NP V I AREV +H V +V+ +ID V
Sbjct: 89 QSTEVDEFIYHESLIHPPLLFHPNPKTVFIMGGGEGSAAREVLRHNTVHRVVMCDIDQEV 148
Query: 519 IELSKRYLPFMAVGFXSPKL 578
++ + YL F S KL
Sbjct: 149 VDFCRTYLTVNWDAFASDKL 168
>10_08_0980 -
22002818-22003008,22003646-22003750,22003859-22003987,
22004076-22004268,22004270-22004473,22004931-22005071,
22005325-22005486,22005664-22005666
Length = 375
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 243 KEVLHTEKSKYQNIQVFDTTSLGKVLVLDGII 338
K+ LH S Y+N +V D +S G +V+DG++
Sbjct: 300 KKHLHGAFSTYKNYEVLDVSSNGGDVVVDGMV 331
>10_08_0120 + 14972010-14973197
Length = 395
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 206 RYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFG---EGSCLGRNHTMHSXR*XFLSGN 376
RY FL+ + TAHR + P F FG EG+ + + H F +
Sbjct: 196 RYATDVEFLVGGETFTAHRLVLAARSPVFMVELFGPMKEGTTVNKIHIFDMEAQVFRALL 255
Query: 377 DIIFAFMLPQ 406
I+ MLP+
Sbjct: 256 KFIYTDMLPE 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,506
Number of Sequences: 37544
Number of extensions: 251309
Number of successful extensions: 442
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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