Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E07
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)       118   5e-27
SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)        96   2e-20
SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)             38   0.008
SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)           35   0.057
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  

>SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)
          Length = 294

 Score =  118 bits (283), Expect = 5e-27
 Identities = 57/97 (58%), Positives = 66/97 (68%)
 Frame = +3

Query: 303 SLGKVLVLDGIIQCTXKDXFSYQEMISFLPLCCHKNPXNVLIXXXXXXXVAREVAKHPQV 482
           S G VLVLDG+IQCT +D FSYQEMIS LPL  H NP  VL+       V RE +KHP V
Sbjct: 157 SFGTVLVLDGVIQCTDRDEFSYQEMISMLPLNSHPNPKKVLVIGGGDGGVIREASKHPSV 216

Query: 483 KHIVLVEIDDRVIELSKRYLPFMAVGFXSPKLNSSCG 593
           + IV  EID+ VI +SK+YLP MAVG+ SPKL    G
Sbjct: 217 ESIVQCEIDEDVINISKKYLPNMAVGYTSPKLTQHIG 253


>SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)
          Length = 317

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
 Frame = +3

Query: 231 SFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMISFLPLCCHKN 410
           SFE+ EVL  +++   ++ +F     G V+ LDGIIQ T +D F Y EM++  PL  H  
Sbjct: 194 SFEIGEVLFEQQTDSWHLIIFRNEEFGTVMALDGIIQTTERDEFIYHEMLTHTPLFAHGA 253

Query: 411 PXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVG-FXSPKLN 581
              VLI       + REV KHP+V+H+  VEID  VI++ K YLP  + G F  P+ N
Sbjct: 254 AKRVLIIGGGDGGILREVLKHPEVEHVTQVEIDQSVIDMCKTYLPNHSNGAFDDPRAN 311


>SB_45640| Best HMM Match : Epimerase (HMM E-Value=9.4e-38)
          Length = 451

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +2

Query: 155 KQEKXGQTKNQLVYGIMRYVAWGYFLIRSQRSTAHRKIKIPEYPSF*YNQFGEGSCLGRN 334
           K+    QTK   V  ++R     YF+I+ +  T  R++++P+ PSF  N   + +   + 
Sbjct: 46  KKSGADQTKRH-VLALLRAAFAIYFVIQIKERTVRRELEMPDQPSFDNNNLVQNTICSQE 104

Query: 335 HTMHSXR*XFLSGN 376
           HT +     +L+GN
Sbjct: 105 HTANGL--SYLNGN 116


>SB_26979| Best HMM Match : THF_DHG_CYH_C (HMM E-Value=0.017)
          Length = 453

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
 Frame = +3

Query: 210 MWPGGTFSFEVKEVLHTEKSKYQNIQVF----DTTSLGKVLVLDGIIQCTXKDXFSYQEM 377
           +WPG   +  +K++L +EKS  Q  +VF    D T  GK +    +   T      YQ M
Sbjct: 132 LWPGPVSTEAIKDMLKSEKSS-QMQRVFADSEDVTFTGKAVA--WLAAATDPSQCVYQLM 188

Query: 378 ISFLPLCCHKN----PXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRY 539
           ++  P+C + N    P   ++       +  E+A+    K +V   + +R     +R+
Sbjct: 189 VNHRPMCVYSNYLDYPDPDIMKKSGSVQIVAELAREYVGKPVVPAALMNRPTRGERRF 246


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 225 TFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMISFLP 392
           TF  ++K      + KY N  V  TTS G V   D ++ CT        +M+ F+P
Sbjct: 170 TFKDKIKLNETVARVKYNNTGVEVTTSSGDVYSADYVV-CTFSTGVLASDMVEFVP 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,679
Number of Sequences: 59808
Number of extensions: 300507
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)