Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E07
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...   142   1e-34
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...   142   1e-34
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    28   4.4  
Z72512-5|CAA96667.2|  351|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score =  142 bits (345), Expect = 1e-34
 Identities = 64/127 (50%), Positives = 89/127 (70%)
 Frame = +3

Query: 213 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMISFLP 392
           WPG  FS +VK+VL  EKSKYQ++ VF++T+ G VLVLDGI+Q T +D FSYQEM++ LP
Sbjct: 43  WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102

Query: 393 LCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFXSP 572
           +  H +P  VLI       + REV KH  V+ + + EID+ VI+++K++LP M+ GF  P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162

Query: 573 KLNSSCG 593
           KL+  CG
Sbjct: 163 KLDLFCG 169


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score =  142 bits (345), Expect = 1e-34
 Identities = 64/127 (50%), Positives = 89/127 (70%)
 Frame = +3

Query: 213 WPGGTFSFEVKEVLHTEKSKYQNIQVFDTTSLGKVLVLDGIIQCTXKDXFSYQEMISFLP 392
           WPG  FS +VK+VL  EKSKYQ++ VF++T+ G VLVLDGI+Q T +D FSYQEM++ LP
Sbjct: 43  WPGQAFSLQVKKVLFHEKSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLP 102

Query: 393 LCCHKNPXNVLIXXXXXXXVAREVAKHPQVKHIVLVEIDDRVIELSKRYLPFMAVGFXSP 572
           +  H +P  VLI       + REV KH  V+ + + EID+ VI+++K++LP M+ GF  P
Sbjct: 103 MFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 162

Query: 573 KLNSSCG 593
           KL+  CG
Sbjct: 163 KLDLFCG 169


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 147 NY*SKKXMDKLKTNWFTESCDMWPGGTFSFEVKEV 251
           N   ++ ++K+  NW    CD+W   T  F V+++
Sbjct: 161 NVEDRESIEKIVDNWRNAPCDIWNENTVVFSVQKL 195


>Z72512-5|CAA96667.2|  351|Caenorhabditis elegans Hypothetical
           protein R07B5.7 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 484 NTLFWLKLMTA*LSYQKGTSRSWRSVSIVLNLT 582
           N + ++KL +A L+  +GTSRS RS    ++LT
Sbjct: 230 NVILFIKLRSAILAATQGTSRSSRSRKAEISLT 262


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 169 WTN*KPTGLRNHAICGLGVLSHSK---SKKYCTQKNQNTRISKFLIQ-PVWGRFLSWTES 336
           WT   P  L   A CG+G +  ++   + + C   +      K L+  P W  ++SWT  
Sbjct: 351 WTLWSPWSLCT-ATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSWMSWTGC 409

Query: 337 YNALXK 354
            N+  K
Sbjct: 410 GNSCGK 415


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +1

Query: 169 WTN*KPTGLRNHAICGLGVLSHSK---SKKYCTQKNQNTRISKFLIQ-PVWGRFLSWTES 336
           WT   P  L   A CG+G +  ++   + + C   +      K L+  P W  ++SWT  
Sbjct: 351 WTLWSPWSLCT-ATCGVGEIQRNRVCQTGRNCDGPSVEVEACKALLPCPTWSSWMSWTGC 409

Query: 337 YNALXK 354
            N+  K
Sbjct: 410 GNSCGK 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,602
Number of Sequences: 27780
Number of extensions: 237915
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)