Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E06
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    62   2e-11
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    29   0.19 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   2.4  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   3.2  
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    24   7.3  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   7.3  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   9.7  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    24   9.7  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 62.5 bits (145), Expect = 2e-11
 Identities = 28/42 (66%), Positives = 31/42 (73%)
 Frame = +2

Query: 116 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
           +YG+GSR C     R GLIRKYGLNI RQ FREYA+DI F K
Sbjct: 13  KYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54



 Score = 28.3 bits (60), Expect = 0.45
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 79  MGHANIWYSHPRQ 117
           M H N+W+SHPR+
Sbjct: 1   MAHENVWFSHPRK 13


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 92   IFGILTLARYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 214
            I G++ +A Y + S  CRSC NR    + Y     +  F+E
Sbjct: 1154 ICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 17  CHLEGVSNLLLVSEKQFNFLKWATQIFGILTLARYGQGSRSCRSCSNRHGL 169
           C +E +     + E  F+FL WA+   G+ T  +    S S  + ++ HGL
Sbjct: 597 CFVEKLKFEYSLKEIFFSFLSWASSPKGLNTFKKLSDSSLS-TTTTDSHGL 646


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -1

Query: 219 AYSLKHCLHMFKPYLRIKPCLLEQDRHDRDPCPYLARVRIPNICVAHFKKLNCFSLTSNK 40
           A SLKH +H  K   + K    E  +   D    +   R PNI   HFK+       S+K
Sbjct: 287 ADSLKHFVHAEKLTKQNK-YRCENCKQLVDASKQMTIYRAPNILTIHFKRFTFNGFQSSK 345

Query: 39  L 37
           +
Sbjct: 346 I 346


>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +1

Query: 121 RTRISVMPILLQQA-WLN--PQVRFEHMQTVLQRV 216
           +T +S +  LL+ A  +N  PQ+RFEH +  L+RV
Sbjct: 4   KTNLSNITTLLRSARCMNRMPQLRFEHTKGDLKRV 38


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 89  QIFGILTLARYGQGSRSCRSCSNRHGLIRKYGLNICRQC 205
           Q   +  +   G GS    +  N+ G +  +GLNI RQC
Sbjct: 274 QPLALKNIISVGAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 141 HDRDPCPYL 115
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -1

Query: 210 LKHCLHMFKPYLRIKPCLLEQDRHDRDPCPYLARVRIPNICVAHFKKLN 64
           LKH   MF+   R      E+   D     +L  VR+ N+   H  KLN
Sbjct: 220 LKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNL---HIDKLN 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,122,049
Number of Sequences: 5004
Number of extensions: 21254
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)