Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E06
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 67 5e-12
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 66 7e-12
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 66 7e-12
11_01_0113 + 881806-881996,882831-882921,883140-883255,884489-88... 28 3.1
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 28 3.1
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 27 5.4
09_02_0557 + 10639845-10639900,10640372-10640647,10640998-10641283 27 5.4
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 27 5.4
01_01_0921 + 7275019-7275363,7275422-7276147,7276289-7276346,727... 27 5.4
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903... 27 7.1
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 26 9.4
03_02_0644 + 10118790-10119559,10120252-10120432,10120526-101207... 26 9.4
03_02_0309 - 7307241-7307715,7309383-7309591,7309730-7309830,730... 26 9.4
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 66.9 bits (156), Expect = 5e-12
Identities = 29/42 (69%), Positives = 30/42 (71%)
Frame = +2
Query: 119 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXKL 244
YG GSR CR C N HGLIRKYGL CRQCFR A DI F K+
Sbjct: 14 YGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 79 MGHANIWYSHPR 114
MGH+N+W SHP+
Sbjct: 1 MGHSNVWNSHPK 12
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 66.5 bits (155), Expect = 7e-12
Identities = 29/41 (70%), Positives = 29/41 (70%)
Frame = +2
Query: 119 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
YG GSR CR C N HGLIRKYGL CRQCFR A DI F K
Sbjct: 14 YGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 79 MGHANIWYSHPR 114
MGH+N+W SHP+
Sbjct: 1 MGHSNVWNSHPK 12
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 66.5 bits (155), Expect = 7e-12
Identities = 29/41 (70%), Positives = 29/41 (70%)
Frame = +2
Query: 119 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
YG GSR CR C N HGLIRKYGL CRQCFR A DI F K
Sbjct: 14 YGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +1
Query: 79 MGHANIWYSHPR 114
MGH+N+W SHP+
Sbjct: 1 MGHSNVWNSHPK 12
>11_01_0113 +
881806-881996,882831-882921,883140-883255,884489-885260
Length = 389
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 186 KPYLRIKPCLLEQDRHDRDPCPYLARVRIPNICVAHFKKLNCF 58
+P R P +L + R R PCP+ + + + H NCF
Sbjct: 27 RPATRSAPSILWRRRRPRSPCPWSVE-KGEEVVLVHASMGNCF 68
>03_05_0487 + 24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 98 GILTLARYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 214
G++ +A + S CR C N+ +++ + C+ F+E
Sbjct: 1160 GLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQE 1198
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P I V H K+ + NKLDT
Sbjct: 759 RLPEILVVHLKRFSYSRFMKNKLDT 783
>09_02_0557 + 10639845-10639900,10640372-10640647,10640998-10641283
Length = 205
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P + V H K+ + T NKL+T
Sbjct: 130 RLPEVLVIHLKRFSYTQFTRNKLET 154
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P + V H K+ + T NKL+T
Sbjct: 777 RLPEVLVIHLKRFSYTQFTRNKLET 801
>01_01_0921 +
7275019-7275363,7275422-7276147,7276289-7276346,
7276773-7276972
Length = 442
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 99 VFSPSPDTDKDLGHADPAPT-GMA*SASTV*TYADSASESMLM 224
VFSP PD K+ G A PAP A A+ T A AS + L+
Sbjct: 210 VFSPPPDHPKNGGAAAPAPAPAHAAGAAGAKTAAAIASAAALV 252
>12_02_1151 +
26488686-26488792,26488897-26489142,26490246-26490381,
26490502-26490561,26490648-26490740,26491421-26491663,
26491828-26491968,26492312-26492482,26492813-26492899,
26492954-26493211,26493300-26493445,26493535-26493922,
26493935-26494092,26494267-26494540,26494721-26494894
Length = 893
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P I + H K+ + T NKL+T
Sbjct: 764 RLPEILIIHLKRFSYSRYTKNKLET 788
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 26 EGVSNLLLVSEKQFNFLKWATQIFGILTLARYGQGSRSCRSCSN 157
EG +N +++SE Q F+ + + Q RSC + SN
Sbjct: 631 EGTNNAMVISEPQLLFVSPHDGTLSFMNDSMCSQEMRSCLNASN 674
>03_02_0644 +
10118790-10119559,10120252-10120432,10120526-10120725,
10120834-10120992,10122375-10122741
Length = 558
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 70 FLKMGHANIWYSHPRQIRTRISVMPILLQQAWLNPQV 180
F+ G++NI+Y+H P L++ NPQV
Sbjct: 305 FVNGGNSNIFYAHEYNATVEFYWAPFLVESNSDNPQV 341
>03_02_0309 -
7307241-7307715,7309383-7309591,7309730-7309830,
7309918-7310149
Length = 338
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 32 VSNLLLVSEKQFNFLKWATQIFGILTLARYGQGSRSCRSCSNRHG 166
V +LL S +F + TQ+FG L +G G R S R G
Sbjct: 34 VDSLLPASATALSFEEGYTQLFGDSNLMLHGDGKRVHISLDERTG 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,338,382
Number of Sequences: 37544
Number of extensions: 143198
Number of successful extensions: 361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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