Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E06
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)                   29   1.8  
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)                      27   5.4  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          27   7.2  

>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 99  VFSPSPDTDKDLGHADPAPTGMA*SASTV*TYADSASESMLMTXDSXSWTKWSXNNK 269
           V+    D ++  G AD  PT +A    ++ T++ SA+    +  D   W+ WS  NK
Sbjct: 368 VYPSQSDANQSSGSADIHPTPVA----SIITWSSSANSRFPVDGDWTEWSTWSYCNK 420


>SB_1572| Best HMM Match : Drf_FH1 (HMM E-Value=0.27)
          Length = 335

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 183 PYLRI-KPCLLEQDRHDRDPCPYLARVRIPNIC 88
           PY RI K CL++QD      CP     RIP  C
Sbjct: 27  PYRRIPKRCLVKQDHRIPKRCPVTQDDRIPKRC 59


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 204 HCLHMFKPYLRIKPCLLEQDRHD 136
           H LH   P    KPCLL+ D H+
Sbjct: 318 HGLHFGSPARARKPCLLDHDEHE 340


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +2

Query: 101 ILTLARYGQGSRSC--RSCSNRHGLIRKYGLNICRQCFREYAHD 226
           ++T   Y +GS  C  +SC   +    +YG N C  C   Y+ D
Sbjct: 138 LITGYEYDRGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQD 181


>SB_41539| Best HMM Match : PUD (HMM E-Value=0.42)
          Length = 1582

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 204  HCLHMFKPYLRIKPCLLEQDRHDRDP--CPYLARVRIPNICVAHFKKLNCFSLTSNKLDT 31
            HCL         +  L E+ RHDR P  C ++   R  +IC +   ++  FSLT+++L  
Sbjct: 1143 HCLACLSNQAAAEGVLYEEGRHDRYPVTCGHIFLGR-GSICRSP-SEMQRFSLTASELLK 1200

Query: 30   P 28
            P
Sbjct: 1201 P 1201


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 94   IWYSHPRQIRTRISVMPILLQQAWLNPQVRFEHM 195
            +W     Q+R R    P+LL +A LNP++  E M
Sbjct: 2131 MWEHAFDQLRVRGEDFPVLLTEAPLNPKMNRERM 2164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,571,152
Number of Sequences: 59808
Number of extensions: 177935
Number of successful extensions: 530
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)