Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E06
         (393 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    75   2e-14
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    28   2.1  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    28   2.1  
Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    27   6.3  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 30/44 (68%), Positives = 36/44 (81%)
 Frame = +2

Query: 116 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXKLD 247
           ++G GSRSCR C+  HGLIRKYGL++CR+CFRE A DI F KLD
Sbjct: 13  KFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56



 Score = 26.6 bits (56), Expect = 6.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 79  MGHANIWYSHPRQ 117
           MG  N+W+SHPR+
Sbjct: 1   MGFQNLWFSHPRK 13


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 140 CRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
           CR C  R+   + +G++ICR C   +   +   K
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 140 CRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
           CR C  R+   + +G++ICR C   +   +   K
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 139 MPILLQQAWLNPQVRFEHMQTVLQRV 216
           + +L  Q W +P++RF+H+   LQ +
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCLQNL 105


>Z70311-6|CAA94379.3|  442|Caenorhabditis elegans Hypothetical
           protein T25B9.8 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 180 YLRIKPCLLEQDRHDRDPCPYLARVRIPNICVAHFKKL 67
           Y+ I  C++  D++D D    LAR++    CV+H  +L
Sbjct: 311 YIMIYVCVMN-DKYDMDKAKELARMQRFKCCVSHLDEL 347


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 139 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HXI 234
           M I + + WL+P ++F+H+    Q +   H +
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQV 132


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 228
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 53  SEKQFNFLKWATQIFGILTLARYGQG 130
           + ++FNFLKW ++ F  L +   G G
Sbjct: 148 NRERFNFLKWGSKAFDNLLIVPPGSG 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,196,304
Number of Sequences: 27780
Number of extensions: 120423
Number of successful extensions: 356
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)