Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E06
(393 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 69 9e-13
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 69 9e-13
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 69 9e-13
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ... 31 0.28
At4g13960.1 68417.m02159 F-box family protein contains F-box dom... 29 1.1
At3g12210.2 68416.m01524 expressed protein 28 2.6
At3g12210.1 68416.m01523 expressed protein 28 2.6
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 26 7.9
At1g60380.1 68414.m06798 apical meristem formation protein-relat... 26 7.9
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 56
Score = 69.3 bits (162), Expect = 9e-13
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +2
Query: 116 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
+YG GSR CR C N HGLIRKYGLN CRQCFR A +I F K
Sbjct: 13 KYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
Score = 28.3 bits (60), Expect = 2.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 79 MGHANIWYSHPRQ 117
MGH+N+W SHP++
Sbjct: 1 MGHSNVWNSHPKK 13
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 69.3 bits (162), Expect = 9e-13
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +2
Query: 116 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
+YG GSR CR C N HGLIRKYGLN CRQCFR A +I F K
Sbjct: 13 KYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
Score = 28.3 bits (60), Expect = 2.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 79 MGHANIWYSHPRQ 117
MGH+N+W SHP++
Sbjct: 1 MGHSNVWNSHPKK 13
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 69.3 bits (162), Expect = 9e-13
Identities = 29/42 (69%), Positives = 31/42 (73%)
Frame = +2
Query: 116 RYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIXFXK 241
+YG GSR CR C N HGLIRKYGLN CRQCFR A +I F K
Sbjct: 13 KYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
Score = 28.3 bits (60), Expect = 2.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 79 MGHANIWYSHPRQ 117
MGH+N+W SHP++
Sbjct: 1 MGHSNVWNSHPKK 13
>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
(RP140) identical to SP|P38420 DNA-directed RNA
polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 2) {Arabidopsis thaliana}
Length = 1188
Score = 31.1 bits (67), Expect = 0.28
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 89 QIFGILTLARYGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 214
++ G++ +A + S CR C N+ +++ Y C+ F+E
Sbjct: 1125 EVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166
>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
Pfam:PF00646
Length = 434
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 198 LHMFKPYLRIKPCLLEQDRHDRDPCPYLARVRIPNIC 88
+HM K ++ PCL+E + + + P ++R+P +C
Sbjct: 367 MHMIKHFVNYFPCLMETNIYIEESGP--PKLRVPQVC 401
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 180 YLRIK-PCLLEQDRHDRDPCPYL 115
+ RIK PCLL HDRDP PYL
Sbjct: 38 FYRIKLPCLL----HDRDPNPYL 56
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 27.9 bits (59), Expect = 2.6
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 180 YLRIK-PCLLEQDRHDRDPCPYL 115
+ RIK PCLL HDRDP PYL
Sbjct: 38 FYRIKLPCLL----HDRDPNPYL 56
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 94 IWY-SHPRQIRTRISVMPILLQQAWLNPQVRFEHMQTVL 207
IW+ + ++R PILL +A LNP+V E M ++
Sbjct: 88 IWHHTFYNELRLEPEEHPILLTEAPLNPKVNREKMTQIM 126
>At1g60380.1 68414.m06798 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 318
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 200 VCICSNRTCGLSHAC 156
+CI +NRTCG++ C
Sbjct: 223 ICIFANRTCGVTDKC 237
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,874,618
Number of Sequences: 28952
Number of extensions: 113752
Number of successful extensions: 276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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