Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E04
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QP22 Cluster: RNA binding motif protein 39; n=20; Coe...    40   0.052
UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55; Euteleost...    40   0.052
UniRef50_A4S1N4 Cluster: Predicted protein; n=2; Ostreococcus|Re...    38   0.21 
UniRef50_Q567D6 Cluster: Rbm39b protein; n=3; Danio rerio|Rep: R...    37   0.36 
UniRef50_Q9TXV2 Cluster: Transbilayer amphipath transporters (Su...    36   0.64 
UniRef50_UPI0000E4A87D Cluster: PREDICTED: similar to RNA-bindin...    36   0.84 
UniRef50_UPI00003561EF Cluster: PREDICTED: hypothetical protein ...    34   3.4  
UniRef50_Q0IMI9 Cluster: Os12g0566800 protein; n=8; Oryza sativa...    33   4.5  
UniRef50_Q6C2E6 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    33   7.8  

>UniRef50_Q5QP22 Cluster: RNA binding motif protein 39; n=20;
           Coelomata|Rep: RNA binding motif protein 39 - Homo
           sapiens (Human)
          Length = 193

 Score = 39.9 bits (89), Expect = 0.052
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +1

Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
           + KS   +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167



 Score = 36.3 bits (80), Expect = 0.64
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 130 MAEDFDVEAMLEAPYNKSDN 189
           MA+D D+EAMLEAPY K +N
Sbjct: 1   MADDIDIEAMLEAPYKKDEN 20


>UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55;
           Euteleostomi|Rep: RNA-binding protein 39 - Homo sapiens
           (Human)
          Length = 530

 Score = 39.9 bits (89), Expect = 0.052
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +1

Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
           + KS   +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167



 Score = 36.3 bits (80), Expect = 0.64
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +1

Query: 130 MAEDFDVEAMLEAPYNKSDN 189
           MA+D D+EAMLEAPY K +N
Sbjct: 1   MADDIDIEAMLEAPYKKDEN 20


>UniRef50_A4S1N4 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 516

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 514 TPEREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRI 642
           TPERE ++E + + R  D +  +L   +RD RTVF   LS ++
Sbjct: 104 TPEREEERERKRQEREADRQRRELEKLDRDTRTVFVTNLSTKL 146


>UniRef50_Q567D6 Cluster: Rbm39b protein; n=3; Danio rerio|Rep:
           Rbm39b protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 164

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +1

Query: 130 MAEDFDVEAMLEAPYNKSDN 189
           MA+DFDVEAMLEAPY K ++
Sbjct: 1   MADDFDVEAMLEAPYRKGES 20


>UniRef50_Q9TXV2 Cluster: Transbilayer amphipath transporters
           (Subfamily iv p-type atpase) protein 2, isoform a; n=3;
           Caenorhabditis|Rep: Transbilayer amphipath transporters
           (Subfamily iv p-type atpase) protein 2, isoform a -
           Caenorhabditis elegans
          Length = 1222

 Score = 36.3 bits (80), Expect = 0.64
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 289 FFYLSIXYAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTL 155
           FFY +  +   N  Y F C Y +    DA++  CY +++  L  L
Sbjct: 824 FFYKNFAFTLTNFWYSFFCGYSAQTVFDAVLIACYNLFFTALPVL 868


>UniRef50_UPI0000E4A87D Cluster: PREDICTED: similar to RNA-binding
           region (RNP1, RRM) containing 2; n=4; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to RNA-binding region
           (RNP1, RRM) containing 2 - Strongylocentrotus purpuratus
          Length = 600

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 19/44 (43%), Positives = 26/44 (59%)
 Frame = +1

Query: 520 EREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
           +R   KE R+K + + P  +D     RD RTVF MQLSQR + +
Sbjct: 180 KRSRSKE-RNKDKEISPVRDDPDADTRDARTVFVMQLSQRAKER 222


>UniRef50_UPI00003561EF Cluster: PREDICTED: hypothetical protein
           XP_859886 isoform 4; n=1; Canis lupus familiaris|Rep:
           PREDICTED: hypothetical protein XP_859886 isoform 4 -
           Canis familiaris
          Length = 62

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 130 MAEDFDVEAMLEAPYNKSD 186
           MA+D D+EAMLEAPY K +
Sbjct: 1   MADDIDIEAMLEAPYKKGE 19


>UniRef50_Q0IMI9 Cluster: Os12g0566800 protein; n=8; Oryza
           sativa|Rep: Os12g0566800 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 410

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -3

Query: 301 YPLIFFYLSIXY--AFLNH---LYPFLCAYLSACPIDALMRKCYPIY 176
           + ++ F+L + Y   F+NH   + PF C+Y   CP+  L+    P++
Sbjct: 276 HAVVLFWLLLFYRFGFMNHHCAVVPFFCSYACHCPMGGLLGAAVPLF 322


>UniRef50_Q6C2E6 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 185

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
 Frame = -3

Query: 310 VNPYPLIFFYLSIXYAFLN---HLYPFLCAYLSACPIDALMRKCYPI--YYMELLT-LPQ 149
           ++ YP I  Y+ + Y F++   HLYPF+  Y+   P  ++    YP    Y+ L   +  
Sbjct: 39  IHLYPFISIYIHL-YPFISIYIHLYPFISIYIHLYPFISIYIHLYPFISIYIHLYPFISI 97

Query: 148 HQNLPPFFKSYSFCRTLSLIFRSFKTLFL 62
           + +L PF   Y     L + F SF   +L
Sbjct: 98  YIHLYPFISIYIHL-FLFIPFYSFLFFYL 125


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,313,756
Number of Sequences: 1657284
Number of extensions: 5431937
Number of successful extensions: 15466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15414
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)