Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E04
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    28   1.0  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   2.3  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 532 QKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
           +K  RS+ R    KL +    ERD RTVF  QL+ R+ ++
Sbjct: 218 RKRSRSRPRERSSKLSE---EERDRRTVFVSQLANRLTSR 254


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 298 PLIFFYLSIXYAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTLPQHQ 143
           PLI+FY     + L+HL  F  A  S CP   + R    + Y  + T  +H+
Sbjct: 294 PLIYFY-----SILSHLLVFAYALYSLCPNSLITRLL--VQYSPIDTFAEHK 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,109
Number of Sequences: 5004
Number of extensions: 24446
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)