Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E04
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       37   0.016
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             29   2.5  

>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 130 MAEDFDVEAMLEAPYNK 180
           MAEDFD+EAMLEAPY K
Sbjct: 1   MAEDFDIEAMLEAPYKK 17



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 493 NVHKKEKTPEREPQKE-YRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
           ++ +K ++    P  + + S  R     + +    E+D RTVFCMQL++ IR +
Sbjct: 107 SIDRKRRSSYESPSPQPFPSPVRKPPEPMTEESAEEKDQRTVFCMQLARNIRPR 160


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -3

Query: 310 VNPYPLIF--FYLSIXYAFLNHLYPFLCAYLSACPIDALMRKCYPIYYMELLTLP 152
           +N YP+ +   + S  + +L HLYP     +   P+   +   YPI Y  +   P
Sbjct: 375 INLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLFTYLIHLYPISYRTIHVSP 429



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 310 VNPYPLIF--FYLSIXYAFLNHLYPFLCAYLSACPIDALMRKCYPIYY 173
           +N YP+ +   + S  + +L HLYP     +   P+   +   YPI Y
Sbjct: 275 INLYPISYRTIHFSPLFTYLIHLYPISYRTIHFSPLLTYLINLYPISY 322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,425
Number of Sequences: 59808
Number of extensions: 174187
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)