Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_E04
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens ... 45 3e-04
CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein. 42 0.002
BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif prote... 42 0.002
BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif prote... 42 0.002
AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein. 42 0.002
AF087905-1|AAP97203.1| 425|Homo sapiens splicing factor SF2 pro... 42 0.002
AL357374-10|CAI13606.1| 231|Homo sapiens RNA binding motif prot... 40 0.006
L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein. 40 0.008
L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein. 40 0.008
BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif prote... 40 0.008
BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein. 40 0.008
AL357374-12|CAI13607.1| 193|Homo sapiens RNA binding motif prot... 40 0.008
AL357374-11|CAI13608.1| 202|Homo sapiens RNA binding motif prot... 40 0.008
AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif prote... 40 0.008
AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif prote... 40 0.008
AL357374-7|CAI13605.1| 336|Homo sapiens RNA binding motif prote... 40 0.008
>AK001344-1|BAA91638.1| 406|Homo sapiens protein ( Homo sapiens
cDNA FLJ10482 fis, clone NT2RP2000153, weakly similar to
GAR2 PROTEIN. ).
Length = 406
Score = 44.8 bits (101), Expect = 3e-04
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +1
Query: 505 KEKTPEREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ + RE + YRS +++L P ERD RTVFCMQL+ RIR +
Sbjct: 98 RSRDHRREDRVHYRSPPLTTGEPVDNLSPEERDARTVFCMQLAARIRPR 146
>CR457257-1|CAG33538.1| 423|Homo sapiens RNPC4 protein.
Length = 423
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 541 YRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+R KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 129 FREKSPVREP-VDNLSPEERDARTVFCMQLAARIRPR 164
>BC024208-1|AAH24208.1| 423|Homo sapiens RNA binding motif protein
23 protein.
Length = 423
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 541 YRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+R KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 129 FREKSPVREP-VDNLSPEERDARTVFCMQLAARIRPR 164
>BC002566-1|AAH02566.1| 424|Homo sapiens RNA binding motif protein
23 protein.
Length = 424
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 541 YRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+R KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 129 FREKSPVREP-VDNLSPEERDARTVFCMQLAARIRPR 164
>AF275678-1|AAG24388.1| 418|Homo sapiens PP239 protein protein.
Length = 418
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 541 YRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+R KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 123 FREKSPVREP-VDNLSPEERDARTVFCMQLAARIRPR 158
>AF087905-1|AAP97203.1| 425|Homo sapiens splicing factor SF2
protein.
Length = 425
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 541 YRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+R KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 129 FREKSPVREP-VDNLSPEERDARTVFCMQLAARIRPR 164
>AL357374-10|CAI13606.1| 231|Homo sapiens RNA binding motif protein
39 protein.
Length = 231
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +1
Query: 493 NVHKKEKTPEREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
++ + ++ + P ++ +S R +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 117 SIKLRRRSRSKSPFRKDKSPVR--EP-IDNLTPEERDARTVFCMQLAARIRPR 166
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein.
Length = 530
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein.
Length = 524
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein.
Length = 508
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 111 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 145
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>AL357374-12|CAI13607.1| 193|Homo sapiens RNA binding motif protein
39 protein.
Length = 193
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>AL357374-11|CAI13608.1| 202|Homo sapiens RNA binding motif protein
39 protein.
Length = 202
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 111 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 145
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif protein
39 protein.
Length = 524
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 133 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 167
Score = 36.3 bits (80), Expect = 0.095
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +1
Query: 130 MAEDFDVEAMLEAPYNKSDN 189
MA+D D+EAMLEAPY K +N
Sbjct: 1 MADDIDIEAMLEAPYKKDEN 20
>AL357374-7|CAI13605.1| 336|Homo sapiens RNA binding motif protein
39 protein.
Length = 336
Score = 39.9 bits (89), Expect = 0.008
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 544 RSKSRGLDPKLEDLPPXERDLRTVFCMQLSQRIRAK 651
+ KS +P +++L P ERD RTVFCMQL+ RIR +
Sbjct: 5 KDKSPVREP-IDNLTPEERDARTVFCMQLAARIRPR 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,576,197
Number of Sequences: 237096
Number of extensions: 747731
Number of successful extensions: 3110
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3109
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -