Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_E04
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ...    31   0.88 
At3g05760.1 68416.m00647 expressed protein                             29   2.0  
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    29   3.5  

>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
           protein
          Length = 527

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 505 KEKTPEREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQL 630
           + +  E+EP+   R   R  D K E     ERD RTVF  Q+
Sbjct: 134 RSRREEKEPEVVERGSRRHRDKKDEPEADPERDQRTVFAYQM 175


>At3g05760.1 68416.m00647 expressed protein
          Length = 202

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 505 KEKTPEREPQKEYRSKSRGLDPKLEDLPPXERD 603
           KE+  ERE ++  RSKSR   P ++  P   RD
Sbjct: 24  KERAREREKKESDRSKSRSKGPPVQRAPLKHRD 56


>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 642

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 520 EREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQR 639
           E + +++ + K +G +P L+ L     +L   FCMQL +R
Sbjct: 116 EDDEEEKRKKKGKGKNPNLDVLSALGDNLMCSFCMQLPER 155


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 520 EREPQKEYRSKSRGLDPKLEDLPPXERDLRTVFCMQLSQR 639
           E + +++ + K +G +P L+ L     +L   FCMQL +R
Sbjct: 116 EDDEEEKRKKKGKGKNPNLDVLSALGDNLMCSFCMQLPER 155


>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 520 EREPQKEYRSKSRGLDPKLEDLPPX---ERDLRTVFCMQLSQR 639
           ERE +   R + R  D K + + P    ERD RTVF  Q++ R
Sbjct: 150 ERETKDRDRDRRRHKDKKEDKVEPEADPERDQRTVFAYQIALR 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,682
Number of Sequences: 28952
Number of extensions: 122999
Number of successful extensions: 362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)