Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D24
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 92 2e-19
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 92 2e-19
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 59 2e-09
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 29 2.0
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 29 2.6
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 28 3.4
05_06_0228 + 26570066-26571352 28 3.4
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 27 6.0
04_03_0916 + 20794240-20794246,20794585-20796545 27 6.0
02_03_0349 + 18010414-18014283 27 6.0
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 27 7.9
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 7.9
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 27 7.9
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 92.3 bits (219), Expect = 2e-19
Identities = 42/73 (57%), Positives = 57/73 (78%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 319
++K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSL R A+ +L ++GLI+ V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMV 93
Query: 320 VQHHGQVIYTRAT 358
H Q IYTRAT
Sbjct: 94 SVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 91.9 bits (218), Expect = 2e-19
Identities = 42/73 (57%), Positives = 56/73 (76%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 319
++K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSL R A+ +L +GLI+ V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMV 93
Query: 320 VQHHGQVIYTRAT 358
H Q IYTRAT
Sbjct: 94 SVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 253
++K+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +2
Query: 254 VRGSLXRXALIELREKGLIKQVVQHHGQVIYTRAT 358
+ GSL R A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 221 ITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATKGD 367
+TPAV E+ + + R L + RE I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 40 REGFGQTASKNTEXEGRIRWRQSQEEEVVQRKSS*QVEQPGV 165
R G G + + G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 46 GFGQTASKNTEXEGRIRWRQSQEEEVVQRKSS*QVEQPG 162
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>05_06_0228 + 26570066-26571352
Length = 428
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = -2
Query: 165 NTW---LFNLSRTFPLDHFFFLALPPPD---PSFXFCVF*GCLAEAFASFLGGH 22
N+W L L P +LALP D P+ C+ GC A AF+ G H
Sbjct: 38 NSWRVALAKLEAPAPPPPLPWLALPESDDGLPATVSCILSGCRAHAFSVLQGAH 91
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 221 ITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATKGD 367
ITPAV E+ + + + L + RE+ I+ +Q + Q++Y +K D
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 239 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 90
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 173 KPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELRE 298
KPT E+L K +PQ K++ AV E + + L +LR+
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHIGDQSDALDAWLWQLRD 80
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 218 LITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATKGD 367
++TPA E+ + + + L+E RE+ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 252 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 109
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +2
Query: 218 LITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATKGD 367
++TPAV E+ + + + L E RE+ I+ +Q + Q+++ +K D
Sbjct: 599 ILTPAVYLEQHQFKLKKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 648
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,229
Number of Sequences: 37544
Number of extensions: 219283
Number of successful extensions: 596
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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