Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D24
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)              144   3e-35
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.38 
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)                    27   6.1  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  
SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_27622| Best HMM Match : Ribosomal_S25 (HMM E-Value=0)
          Length = 115

 Score =  144 bits (349), Expect = 3e-35
 Identities = 72/115 (62%), Positives = 82/115 (71%)
 Frame = +2

Query: 26  PPKKDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEV 205
           PPKKD K  AK+PQK Q                    VRDKLNN VLFDK TY+KLYKEV
Sbjct: 1   PPKKDPKKDAKKPQKAQKPAGSGGGKAKKKKWSKGK-VRDKLNNLVLFDKATYDKLYKEV 59

Query: 206 PQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATKGDD 370
           P Y+LITP+VVSERLK+RGSL R AL+EL+ KGLIK+V +HH Q+IYTRATKG D
Sbjct: 60  PSYRLITPSVVSERLKIRGSLARRALLELQSKGLIKEVSKHHSQLIYTRATKGAD 114


>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 330  WCWTTCLMRPFSLSSMSAXLXREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLF 151
            WC     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  
Sbjct: 2144 WCGPVYFVRPFCLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSA 2198

Query: 150  NLSRTFPL 127
            + +R  P+
Sbjct: 2199 SRTREMPV 2206


>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
          Length = 1244

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 204 TSLYSFSYVGLSNNTWLFNLSRTFPLDH 121
           +SL+     G+SN+ WL N S T P++H
Sbjct: 250 SSLHIEKENGISNDDWLSNPSFTSPIEH 277


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 57  NSLKKHRXRRKDPVAAKPRRRSGPK 131
           N   KH  ++K PV   P+R  GPK
Sbjct: 304 NDKHKHNSKQKTPVVYFPKRPYGPK 328


>SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = -2

Query: 327 CWTTCLMRPFSLSSMSAXLXREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFN 148
           C     +RPF LSS++  L R      +  ++ GV     GT     S  G++   W  +
Sbjct: 367 CGPVYFVRPFRLSSIAYRLIRA-----IMSSSLGVACSPVGTKAPGVSSGGITRTIWSAS 421

Query: 147 LSRTFPLDHFFFL 109
             R  P+   F +
Sbjct: 422 RKREMPVYTVFVI 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,655,080
Number of Sequences: 59808
Number of extensions: 253077
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)