Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D24
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   122   1e-28
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   3.1  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    28   3.1  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    27   9.4  
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   9.4  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   9.4  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  122 bits (294), Expect = 1e-28
 Identities = 65/117 (55%), Positives = 74/117 (63%)
 Frame = +2

Query: 26  PPKKDAKASAKQPQKTQXXXXXXXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYEKLYKEV 205
           PPKKD K     P K +                    VRDKLNN VLFD+ TY+KLYKEV
Sbjct: 2   PPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGK---VRDKLNNMVLFDQATYDKLYKEV 58

Query: 206 PQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQVVQHHGQVIYTRATKGDDPV 376
             YKLITP+VVSERLKVR SL +  L EL+ KGL+K VV HHGQV+YTRATK  D +
Sbjct: 59  ITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 34  EGREGFGQTASKNTEXEGRIRWRQSQEEEVVQRK 135
           E REG G    +      RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 137 VRDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 268
           V  K  N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 688 VYGKNTNCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 77  SVFFEAVWPKPSRPSWAGIV 18
           S+FF A+WPKP R   + IV
Sbjct: 71  SLFFVAIWPKPVRMVHSTIV 90


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 288 SMSAXLXREPRTFNLSDTTAGVISLYCG 205
           S++  +  E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -3

Query: 206 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 87
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,231,495
Number of Sequences: 27780
Number of extensions: 183452
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)