Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D24
(484 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34555.1 68417.m04910 40S ribosomal protein S25, putative 92 2e-19
At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E) ribo... 91 5e-19
At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B) 91 5e-19
At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 85 2e-17
At4g27630.1 68417.m03971 expressed protein 29 1.2
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 28 2.9
At2g17250.1 68415.m01992 expressed protein weak similarity to Ri... 27 5.0
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 27 8.8
At1g24706.1 68414.m03104 expressed protein 27 8.8
>At4g34555.1 68417.m04910 40S ribosomal protein S25, putative
Length = 108
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/75 (54%), Positives = 56/75 (74%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 319
++K+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSL R A+ EL KG I+ V
Sbjct: 34 KEKVNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMV 93
Query: 320 VQHHGQVIYTRATKG 364
H Q IYTRAT G
Sbjct: 94 SAHSSQQIYTRATHG 108
>At4g39200.1 68417.m05550 40S ribosomal protein S25 (RPS25E)
ribosomal protein S25, Lycopersicon esculentum,
PIR2:S40089
Length = 108
Score = 90.6 bits (215), Expect = 5e-19
Identities = 39/73 (53%), Positives = 56/73 (76%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 319
++K+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSL R A+ EL KG+I+ V
Sbjct: 34 KEKVNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMV 93
Query: 320 VQHHGQVIYTRAT 358
H Q IYTRAT
Sbjct: 94 AAHSSQQIYTRAT 106
>At2g21580.1 68415.m02567 40S ribosomal protein S25 (RPS25B)
Length = 108
Score = 90.6 bits (215), Expect = 5e-19
Identities = 40/73 (54%), Positives = 56/73 (76%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 319
++K+NN VLFD+ TY+KL E P++KLITP+++S+R+++ GSL R A+ EL KGLI+ V
Sbjct: 34 KEKVNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMV 93
Query: 320 VQHHGQVIYTRAT 358
H Q IYTRAT
Sbjct: 94 SAHSSQQIYTRAT 106
>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)
Length = 125
Score = 85.0 bits (201), Expect = 2e-17
Identities = 38/73 (52%), Positives = 54/73 (73%)
Frame = +2
Query: 140 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLXRXALIELREKGLIKQV 319
++K+NN VLFD+ TY+KL E P++KLITP+++S+RL++ GSL R A+ +L KG I+ V
Sbjct: 50 KEKVNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMV 109
Query: 320 VQHHGQVIYTRAT 358
H Q I TRAT
Sbjct: 110 STHSSQQINTRAT 122
>At4g27630.1 68417.m03971 expressed protein
Length = 348
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 342 ITCPWCWTTCLMRPFSLSSMSAXLXREPRTFNLSDTTAGVISLYCGTSLYSFSYVGL 172
I P CWTT L PF L + R + T V+S + +L +SY+ L
Sbjct: 4 ILSPTCWTTLLKHPFILKGFFSMPQLVSRIGVIGVTLMAVLSGFGAVNL-PYSYISL 59
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to
CAF protein [Arabidopsis thaliana] GI:6102610; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF03368: Domain of
unknown function, PF00636: RNase3 domain, PF00035:
Double-stranded RNA binding motif
Length = 1676
Score = 28.3 bits (60), Expect = 2.9
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 328 VLDYLFDETFFPKFDECXSRQGTSDL*PFRYDSRCD*LVLWDF-LVQFLICGFIKQHLVV 152
VLDYL FF F + Q T DL ++ V F L +FL C I H V+
Sbjct: 1310 VLDYLMTSYFFTVFPKLKPGQLT-DLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVI 1368
Query: 151 QLVTNF 134
+ TNF
Sbjct: 1369 EDYTNF 1374
>At2g17250.1 68415.m01992 expressed protein weak similarity to
Ribosome biogenesis protein MAK21 (Swiss-Prot:Q12176)
[Saccharomyces cerevisiae]
Length = 577
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +2
Query: 152 NNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVR 259
+++ + +KPT +K E L++PA +S+R+K++
Sbjct: 245 SDESISEKPTDKKKKTEKGDSTLLSPATISKRMKLK 280
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 187 LICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 95
++CG + +H V++L F+ G L +GF T
Sbjct: 213 MLCGLLMRHEVLRLGAVFASGLLRAIGFLQT 243
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 150 NLSRTFPLDHFFFLALPPPDP 88
+L ++ P DHF LPPP P
Sbjct: 1562 SLEKSHPDDHFHSQGLPPPPP 1582
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,614
Number of Sequences: 28952
Number of extensions: 169654
Number of successful extensions: 481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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