Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D23
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    26   2.6  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    26   3.5  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   8.0  

>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 237 PNWEEFXKAAEMLYLQDPINTRYSVKYSHSKGAFNV 344
           P W E+ K ++ LY+ + I   Y   +    G F++
Sbjct: 33  PTWVEWEKKSKRLYVANEIEEGYVAVFEWDNGKFSL 68


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 252 FXKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKK 365
           F   +E++ L   I   Y + Y HS   FNV IT N K
Sbjct: 226 FGLPSEVMPLFPQIEAVYEM-YPHSLPGFNVNITTNSK 262


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 309 VKYSHSKGAFNVKITDNKKCLQYK 380
           +KY+ S  +FN+ I DN K +  K
Sbjct: 9   IKYAQSGDSFNILIKDNAKKITEK 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,265
Number of Sequences: 5004
Number of extensions: 36516
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)