Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D23
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711           45   4e-05
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    27   8.0  

>06_01_1044 - 8208126-8208230,8208468-8208536,8208640-8208711
          Length = 81

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +3

Query: 225 MTFVPNWEEFXKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQY 377
           M +  +W+EF   +  L+   P  TRY VKY H +G   +K+TDN + + +
Sbjct: 1   MVYFDSWDEFVSKSVELFRNHPDTTRYVVKYRHCEGKLVLKVTDNHENIHW 51


>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 301 GTVLNIHIQKVHLMSKLLTIKSAFN-TKQKY-SKMLGKXINLCQ 426
           G  ++ H   VH + +L TIK+  N T Q++  KM+      CQ
Sbjct: 414 GNFISSHSNNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQ 457


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,152,808
Number of Sequences: 37544
Number of extensions: 180631
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)