Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D23
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)                 27   6.2  

>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 303 TEYLLDPVDITFPRLXQTLPNLEQKSLRPIIDYSL 199
           T+Y  DP +I   R+ Q L N +Q S  P++DY++
Sbjct: 200 TQY--DPYNIRL-RITQVLENRKQNSSEPVLDYAI 231


>SB_48318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1243

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 285 PVDITFPRLXQTLPNLEQKSLRPIIDYSLGMFLKIVPEYV 166
           PVD+   RL   LPN+E+++ +  +D   GM L+  PE +
Sbjct: 33  PVDLQDARLPVALPNVERQNGKLALDLH-GMKLQYFPEQI 71


>SB_24895| Best HMM Match : mTERF (HMM E-Value=2.2e-05)
          Length = 342

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 331 PFECEYLTLYRVFIGSCRYNISAAXSNSSQFGTKVITA 218
           PF+   + L RV  G C Y   A  +N +  G ++++A
Sbjct: 21  PFQQREIVLSRVGNGLCNYRFLAGRANQTTNGEQILSA 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,378
Number of Sequences: 59808
Number of extensions: 244352
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)