Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D23
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -1

Query: 273 TFPRLXQTLPNLEQKSLRPIIDYSLGMFLKI 181
           T P L +   +L  + LRP+    +G F ++
Sbjct: 351 TIPELNEEFRDLRLQDLRPLATLGVGGFGRV 381


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 361 LLSVILTLNAPFECEYLT 308
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 361 LLSVILTLNAPFECEYLT 308
           LLSV L  NA F CE  T
Sbjct: 339 LLSVHLGGNAEFRCEVST 356


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 85  ILIMYLCMYSFYL 47
           +LI +LC+  FYL
Sbjct: 245 VLISFLCVLVFYL 257


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 300 RYSVKYSHSKGAFNVKITDNKKCLQYKTE 386
           R+  +Y   +  F  + TD++   +YK E
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEE 182


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 392 LYFCFVLKALFIVSNFDIKCT 330
           LY   +LK   I+ + D++CT
Sbjct: 11  LYAIKILKKDIIIQDDDVECT 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,597
Number of Sequences: 438
Number of extensions: 2485
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)