Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D23
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49100.1 68416.m05363 signal recognition particle 9 kDa prote...    68   3e-12
At5g40170.1 68418.m04875 disease resistance family protein conta...    29   1.3  
At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family...    27   8.9  
At4g03190.1 68417.m00436 F-box family protein (FBL18) almost ide...    27   8.9  
At3g32140.1 68416.m04093 hypothetical protein contains Pfam prof...    27   8.9  
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    27   8.9  

>At3g49100.1 68416.m05363 signal recognition particle 9 kDa protein,
           putative / SRP9, putative similar to SP|P49458 Signal
           recognition particle 9 kDa protein (SRP9) {Homo
           sapiens}; contains Pfam PF05486: Signal recognition
           particle 9 kDa protein (SRP9)
          Length = 103

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 28/74 (37%), Positives = 46/74 (62%)
 Frame = +3

Query: 225 MTFVPNWEEFXKAAEMLYLQDPINTRYSVKYSHSKGAFNVKITDNKKCLQYKTEVQQDVR 404
           M ++ +W+EF   +  L+  DP +TRY +KY H  G   +K+TDNK+CL++KT+  Q+ +
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 405 KIXKFMSNLLRHMA 446
           K+ K  +     MA
Sbjct: 61  KMEKLNNIFFTLMA 74


>At5g40170.1 68418.m04875 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4 [Lycopersicon
           hirsutum] gi|2808683|emb|CAA05268
          Length = 792

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 291 LDPVDITFPRLXQTLPNLEQKSLRPIIDYSLGMFLKIVPEYVGTEQYAI 145
           L  +D+++ +L   +PNL   +L   ID S   F   +P Y+ T  + +
Sbjct: 165 LTNLDLSYNKLTGGIPNLHSLTLLENIDLSYNKFSGAIPSYLFTMPFLV 213


>At4g25290.1 68417.m03637 deoxyribodipyrimidine photolyase family
           protein / DNA photolyase family protein contains Pfam
           domain, PF00875: deoxyribodipyrimidine photolyase
          Length = 581

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 261 LXQTLPNLEQKSLRPIIDYSLG 196
           L + L NL++ S+ PI+D SLG
Sbjct: 242 LMERLGNLKESSMEPIVDGSLG 263


>At4g03190.1 68417.m00436 F-box family protein (FBL18) almost
           identical to GRR1-like protein 1 GI:12658970 from
           [Arabidopsis thaliana]; similar to leucine-rich repeats
           containing F-box protein FBL3 (GI:5919219) [Homo
           sapiens]; similar to F-box protein FBL2 (GI:6063090)
           [Homo sapiens]
          Length = 585

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 355 SVILTLNAPFECEYLTLYRVFIGSCRYNISAA 260
           SV L   + FE E  T  RVF+G+C Y +S A
Sbjct: 25  SVSLVCKSWFETERKTRKRVFVGNC-YAVSPA 55


>At3g32140.1 68416.m04093 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 174

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 107 VYPICN*CVRRAYIAYCSVPTYSGTIFKNIP 199
           ++P+ + CVR   +A+ ++P  S  I ++IP
Sbjct: 44  IWPVPDFCVRMELLAFEAIPQLSKKIIEDIP 74


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
           DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
           [Arabidopsis thaliana]
          Length = 1576

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 186 LKTFLVNSQ*LAVMTFVPNWEEFXKAAEML 275
           +K    +S+  A++ F+P WEE  K  E L
Sbjct: 566 MKKICSDSKDGAILVFLPGWEEISKTKEKL 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,858,346
Number of Sequences: 28952
Number of extensions: 165149
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)