Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D18
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    30   0.25 
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    29   0.77 
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.0  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    26   4.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   5.4  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    26   5.4  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   5.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.2  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   9.5  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    25   9.5  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 28/89 (31%), Positives = 45/89 (50%)
 Frame = +3

Query: 69  SESWPSAGCLSSSFWSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSSYSLVRPRAT* 248
           S S  S+   SSS +   +    ++ST TVT     S+ SS VP S T++ +L   +A+ 
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVP-SSTAALALNASKAS- 283

Query: 249 CRLLHTNGSTSSIRWSVLPCSSLAVPLLL 335
               HT+ +  +I   V+ C + AV + L
Sbjct: 284 ---NHTSLNAGAIVGIVIGCVAFAVVMAL 309


>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 155 SYNADADIGMLVTGTFVGYLIIFAGAAAGYIMQT---PSHKRIDIFYSLVG 298
           SYN + ++ +     F+G+L++  G   GY +     P +  +  F S VG
Sbjct: 17  SYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFISCVG 67


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 503 MLHTNTMLSYXDYYGPPNNLNSTAITVTS 589
           ++HTNT +S       P N N+T +++T+
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLTN 123


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 140 ALHYHSYNADADIGMLVTGTFVGYLII--FAGAAAGYIM 250
           A  Y S+   A I ML+  +F GY I+  F GA  G+ +
Sbjct: 116 AAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFL 154


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 337 VNNNGTASDEQGNTDQRI-EDVDPFV*RSLHYVARGRTSEYDEVPDKGTGDEHA 179
           V+ N        + D+RI E V P   R+ +     RT ++DE+P    GD  +
Sbjct: 302 VDTNNVELTNASSQDRRINEGVRPIFWRTRNESYVSRTDQWDELPHGRWGDSRS 355


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 512 TNTMLSYXDYYGPPNNLNSTAITVT 586
           TNT LS  D +  P NL  T IT T
Sbjct: 181 TNTHLSLQDSFLKPENLQKTLITNT 205


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 223 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 324
           R+  R LH+   F Q  RHL+  G+  + R   C
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 248  MQTPSHKRIDIFYSLVGVALFVASGAII 331
            M TP  K  ++F+S V +   +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 517 ICMQHLKSFSDCAAXFCVRSLASSLREDSINK 422
           IC   L+ FS  A   C+R+ + S RE  + +
Sbjct: 684 ICKLSLQKFSSNAIEQCIRTASPSTREQMLQE 715


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 308 FVASGAIIIDRFQHYGKSEIKDKNLAKASLAIINGAI 418
           FV +G  IID  +  G  +IKD      S A+I   +
Sbjct: 10  FVTTGMFIIDEIEFDGGKKIKDIIGGAGSFALIGARL 46


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 591 YFYTYYVLFSNCFXFFV 641
           YF T++V F  CF FF+
Sbjct: 467 YFITHFVRFVVCFTFFL 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,621
Number of Sequences: 5004
Number of extensions: 50949
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)