Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D17
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                29   3.3  
SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 201 WTRR--TTRSFTAFLLNSSCCEFIFKGYLHLCFN 106
           W +R  T    T + L++   E + KGY HLCFN
Sbjct: 437 WEKRDVTAEESTFYDLDNENREDLLKGYRHLCFN 470


>SB_8535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 278 CKLY*TCVSQNTGTCPESSCACPETSC 358
           C L   C SQ   TC + +C C  TSC
Sbjct: 183 CPLATPCASQFGITCRKLTCFCSRTSC 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,908,320
Number of Sequences: 59808
Number of extensions: 117437
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)