Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D16
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    29   0.22 
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    29   0.22 
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   1.6  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   3.6  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   3.6  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 44  TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 199
           +NR   +A    R    S GCD   N T PD     +Y + + TD  +L  F
Sbjct: 400 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 450


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 29.1 bits (62), Expect = 0.22
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 44  TNRHRVVAIRYARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLF 199
           +NR   +A    R    S GCD   N T PD     +Y + + TD  +L  F
Sbjct: 320 SNRPNRIA-EIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 370


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 77  ARLRSESRGCDLPENRTTPDFLNN*TYILNSSTDHQHLFLFSTVTNE 217
           ARL++E  G D PE +   + +   T  +   +   + F+   VTN+
Sbjct: 111 ARLKAERNGEDFPEEQFDSNCITPGTTFMERVSRQLYYFIHKKVTND 157


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 197 TETNADDQLTSLKCMFNYLKNPVLSGS-RGGRSLLTPT 87
           TET  DD   S K    Y+K+ +++ S +GG S +  T
Sbjct: 124 TETQFDDDRDSTKLSSEYVKDDIVNKSTKGGVSPIKET 161


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 215 RL*RLKTETNADDQLTSLKCMFNYLKNPVLSGSRGGRSLLTPTSNVRS 72
           RL +LK   N   +  S K      KNP  S ++  +S  + +SN+ S
Sbjct: 58  RLEKLKLRKNGVRKSNSEKPSVGIEKNPSFSTTKSAKSFSSTSSNIDS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,078,803
Number of Sequences: 5004
Number of extensions: 18644
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)