Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D16
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0260 - 18857970-18858737,18858909-18859145                       27   4.5  
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351...    27   4.5  
06_01_1129 + 9326975-9327071,9327174-9327306,9327408-9327479,932...    26   7.9  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    26   7.9  
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    26   7.9  

>06_03_0260 - 18857970-18858737,18858909-18859145
          Length = 334

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   HVEEVIXIFRERGTNRHRVVAIRYARLRSESRGCDLPENR 124
           H++ ++ +FRE G +   + A+  A    ++  CD  E R
Sbjct: 175 HLDVLLGVFREHGLDERDLTALSGAHTVGKAHSCDNFEGR 214


>01_05_0652 -
           23934604-23934636,23934783-23934893,23935000-23935188,
           23935893-23936012,23936109-23936273,23936638-23936790,
           23936867-23936976,23937280-23937397,23938197-23938427,
           23938984-23939175,23939661-23939945,23940637-23940686,
           23940846-23940921,23941048-23941135,23941689-23941771,
           23941883-23942248,23942462-23942476,23942909-23943018,
           23943134-23943231,23943961-23944019
          Length = 883

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 131 VLSGSRGGRSLLTPTSNVRSV*RLLDDG 48
           V+ GS G  SL +P + +  V RLL+DG
Sbjct: 534 VMFGSDGAGSLTSPANALADVDRLLEDG 561


>06_01_1129 +
           9326975-9327071,9327174-9327306,9327408-9327479,
           9327593-9327736,9327950-9328021,9328219-9328278,
           9328384-9328637,9329940-9330281,9332001-9332380,
           9333867-9334235
          Length = 640

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 205 RHKRNNSIMFIVMSQFIEIVNV 270
           RH+RN  I+F V  Q IE VN+
Sbjct: 265 RHRRNRQILFDVDEQQIENVNL 286


>06_01_1087 +
           8901950-8902102,8902960-8903996,8904438-8904586,
           8905437-8905690,8905785-8908799,8908889-8909001,
           8909975-8910164,8910399-8910512,8910591-8910698,
           8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 112 EVAAS*LRPQTCVAYSDYSMTVCSSFTKNSNNLFDV 5
           EV AS   PQ+  AY DY        T NSN+L  V
Sbjct: 576 EVQAS--LPQSVFAYQDYHEETSRRHTNNSNDLTKV 609


>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
            9625520-9626032,9626801-9629153
          Length = 1342

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 285  NMNSKNINYFDKLRHYNEHYGIISFVTVENRNKC**SVDEFKMYVQLFKKSGVVRFS 115
            N+   N+   +++  Y   Y II    +E   K    ++EFKM+++   K G +R S
Sbjct: 938  NLEVPNLESEERINEYELKY-IIKTSPIEATPK---DIEEFKMHIEELLKLGAIRES 990


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,382,728
Number of Sequences: 37544
Number of extensions: 102107
Number of successful extensions: 230
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)