Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D16
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i...    26   8.6  

>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
           isoleucine--tRNA ligase, putative similar to SP|P41252
           Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
           (Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
           contains Pfam profile PF00133: tRNA synthetases class I
           (I, L, M and V)
          Length = 1190

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 245 DITMNIMELFRL*RLKTETNADDQLTSLKCMFNYL 141
           D   NI   F   RLK  T  DD  T+L  +FN L
Sbjct: 760 DNLTNIYVRFNRKRLKGRTGEDDCHTALSTLFNVL 794


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,430,434
Number of Sequences: 28952
Number of extensions: 90590
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)