Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D14
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NPD3 Cluster: Exosome complex exonuclease RRP41; n=32... 186 3e-46
UniRef50_UPI0000DB6F09 Cluster: PREDICTED: similar to putative e... 170 3e-41
UniRef50_UPI00015B5B6C Cluster: PREDICTED: similar to ENSANGP000... 162 6e-39
UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome s... 159 2e-38
UniRef50_Q54EU6 Cluster: Putative uncharacterized protein; n=1; ... 143 3e-33
UniRef50_Q9SP08 Cluster: Exonuclease RRP41; n=5; Magnoliophyta|R... 140 3e-32
UniRef50_Q17533 Cluster: Putative exosome complex exonuclease RR... 140 4e-32
UniRef50_Q9UXC2 Cluster: Probable exosome complex exonuclease 1;... 118 1e-25
UniRef50_A0RXU1 Cluster: RNase PH; n=1; Cenarchaeum symbiosum|Re... 117 3e-25
UniRef50_Q6L223 Cluster: Ribonuclease PH; n=2; Thermoplasmatales... 116 4e-25
UniRef50_Q8PTT8 Cluster: Probable exosome complex exonuclease 1;... 116 4e-25
UniRef50_UPI00005A29C6 Cluster: PREDICTED: similar to Exosome co... 114 2e-24
UniRef50_A7DRS3 Cluster: Exosome complex exonuclease 1; n=1; Can... 114 2e-24
UniRef50_O42872 Cluster: Putative exosome complex exonuclease RR... 113 3e-24
UniRef50_Q5BZN7 Cluster: SJCHGC06185 protein; n=1; Schistosoma j... 110 3e-23
UniRef50_Q6CA11 Cluster: Yarrowia lipolytica chromosome D of str... 107 2e-22
UniRef50_A7RQ94 Cluster: Predicted protein; n=1; Nematostella ve... 100 3e-20
UniRef50_Q4P9I6 Cluster: Putative uncharacterized protein; n=1; ... 99 5e-20
UniRef50_Q5KHU0 Cluster: Putative uncharacterized protein; n=1; ... 97 2e-19
UniRef50_P46948 Cluster: Exosome complex exonuclease RRP41; n=7;... 95 1e-18
UniRef50_Q4Q1B7 Cluster: Exosome complex exonuclease RRP41, puta... 92 9e-18
UniRef50_A1DFF4 Cluster: Exosome complex endonuclease 1/ribosoma... 88 2e-16
UniRef50_Q01E66 Cluster: Putative exonuclease RRP41; n=1; Ostreo... 85 1e-15
UniRef50_Q55BB0 Cluster: Putative uncharacterized protein; n=1; ... 85 1e-15
UniRef50_UPI00015B4338 Cluster: PREDICTED: similar to exosomal 3... 85 2e-15
UniRef50_UPI00006CFE64 Cluster: 3'''' exoribonuclease family, do... 84 2e-15
UniRef50_Q1HQF7 Cluster: Exosomal 3'-5' exoribonuclease complex ... 84 2e-15
UniRef50_UPI0000D569CA Cluster: PREDICTED: similar to CG8025-PA;... 84 3e-15
UniRef50_UPI0000498B51 Cluster: exosome complex exonuclease; n=1... 83 6e-15
UniRef50_A4R215 Cluster: Putative uncharacterized protein; n=7; ... 82 1e-14
UniRef50_Q8ILI7 Cluster: Exosome complex exonuclease rrp41, puta... 81 3e-14
UniRef50_Q5CPV0 Cluster: Archeo-eukaryotic exosomal RNAse; n=2; ... 80 4e-14
UniRef50_A2DCK7 Cluster: 3' exoribonuclease family, domain 1 con... 79 9e-14
UniRef50_Q6P0I8 Cluster: Exosome complex exonuclease MTR3; n=1; ... 74 3e-12
UniRef50_Q5CWV7 Cluster: Archeo-eukaryotice exosomal RNAse PH; n... 73 8e-12
UniRef50_Q01B24 Cluster: Ribonuclease PH; n=2; Ostreococcus|Rep:... 72 1e-11
UniRef50_Q74NF6 Cluster: NEQ248; n=1; Nanoarchaeum equitans|Rep:... 71 3e-11
UniRef50_Q5RKV6 Cluster: Exosome complex exonuclease MTR3; n=9; ... 71 3e-11
UniRef50_Q4P5R4 Cluster: Putative uncharacterized protein; n=1; ... 69 7e-11
UniRef50_Q4T603 Cluster: Chromosome undetermined SCAF9013, whole... 68 2e-10
UniRef50_A2RVK7 Cluster: At4g27490; n=7; Magnoliophyta|Rep: At4g... 68 2e-10
UniRef50_Q9P7R3 Cluster: Ribonuclease PH-like; n=1; Schizosaccha... 67 4e-10
UniRef50_A7AQY6 Cluster: Exosome complex exonuclease rrp41, puta... 64 3e-09
UniRef50_UPI0000D56AF5 Cluster: PREDICTED: similar to exosome co... 63 5e-09
UniRef50_Q1HPJ2 Cluster: MRNA transport regulator 3; n=1; Bombyx... 62 9e-09
UniRef50_Q9VW53 Cluster: CG8025-PA; n=3; Sophophora|Rep: CG8025-... 62 1e-08
UniRef50_Q5KA82 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_Q7SAL5 Cluster: Putative uncharacterized protein NCU080... 61 2e-08
UniRef50_Q54Q83 Cluster: Putative uncharacterized protein; n=1; ... 60 3e-08
UniRef50_Q4DJB2 Cluster: Ribosomal RNA processing protein 41B, p... 60 3e-08
UniRef50_A0D7C7 Cluster: Chromosome undetermined scaffold_4, who... 60 5e-08
UniRef50_Q6BY29 Cluster: Debaryomyces hansenii chromosome A of s... 60 5e-08
UniRef50_A7P578 Cluster: Chromosome chr4 scaffold_6, whole genom... 60 6e-08
UniRef50_Q2UDE6 Cluster: Predicted protein; n=11; Pezizomycotina... 59 1e-07
UniRef50_UPI0000519D91 Cluster: PREDICTED: similar to Exosome co... 58 1e-07
UniRef50_A5KBP5 Cluster: Putative uncharacterized protein; n=3; ... 57 4e-07
UniRef50_Q17952 Cluster: Putative uncharacterized protein crn-5;... 56 6e-07
UniRef50_Q174Q5 Cluster: Putative uncharacterized protein; n=1; ... 56 6e-07
UniRef50_UPI0000E47A9B Cluster: PREDICTED: similar to exosome co... 45 6e-06
UniRef50_Q4N8R6 Cluster: Exosome complex exonuclease rrp41, puta... 52 1e-05
UniRef50_UPI0000F2E71E Cluster: PREDICTED: hypothetical protein;... 52 2e-05
UniRef50_O66593 Cluster: Polyribonucleotide nucleotidyltransfera... 51 3e-05
UniRef50_A5CCD0 Cluster: TRNA nucleotidyltransferase; n=1; Orien... 50 4e-05
UniRef50_A5DL78 Cluster: Putative uncharacterized protein; n=1; ... 50 4e-05
UniRef50_Q7QK69 Cluster: ENSANGP00000019439; n=1; Anopheles gamb... 50 5e-05
UniRef50_Q4FZ13 Cluster: Ribosomal RNA processing protein, putat... 50 5e-05
UniRef50_Q9RU11 Cluster: Ribonuclease PH; n=2; Deinococcus|Rep: ... 50 5e-05
UniRef50_Q9VGZ2 Cluster: CG4043-PA; n=3; Sophophora|Rep: CG4043-... 49 1e-04
UniRef50_Q95Z09 Cluster: Rrp41p homologue; n=1; Trypanosoma bruc... 49 1e-04
UniRef50_Q62HZ8 Cluster: Ribonuclease PH; n=443; Bacteria|Rep: R... 48 1e-04
UniRef50_Q180F2 Cluster: HAM1 protein homolog; n=4; Clostridiace... 48 2e-04
UniRef50_Q8SQN4 Cluster: RIBONUCLEASE PH-LIKE PROTEIN; n=1; Ence... 48 2e-04
UniRef50_Q5KWI5 Cluster: Ribonuclease PH; n=82; Bacteria|Rep: Ri... 48 3e-04
UniRef50_Q9NQT4 Cluster: Exosome complex exonuclease RRP46; n=18... 47 5e-04
UniRef50_Q8A4N6 Cluster: Polyribonucleotide nucleotidyltransfera... 46 6e-04
UniRef50_A7RZV7 Cluster: Predicted protein; n=1; Nematostella ve... 46 6e-04
UniRef50_A6NT19 Cluster: Putative uncharacterized protein; n=1; ... 46 8e-04
UniRef50_A4M9K5 Cluster: Polyribonucleotide nucleotidyltransfera... 46 8e-04
UniRef50_Q4T604 Cluster: Chromosome undetermined SCAF9013, whole... 46 0.001
UniRef50_O83856 Cluster: Polyribonucleotide nucleotidyltransfera... 46 0.001
UniRef50_Q9ZAE1 Cluster: Polynucleotide phosphorylase; n=13; Bac... 46 0.001
UniRef50_Q9S7G6 Cluster: Polynucleotide phosphorylase; n=5; Magn... 46 0.001
UniRef50_UPI0000498E66 Cluster: exosome complex exonuclease; n=1... 45 0.001
UniRef50_Q67P77 Cluster: Polynucleotide phosphorylase; n=17; Bac... 44 0.002
UniRef50_Q08VK2 Cluster: Ribonuclease PH; n=2; Proteobacteria|Re... 44 0.002
UniRef50_UPI0000519D97 Cluster: PREDICTED: similar to polyribonu... 44 0.003
UniRef50_Q83HF6 Cluster: Ribonuclease PH; n=3; Tropheryma whippl... 44 0.004
UniRef50_Q3ZXV6 Cluster: Polyribonucleotide nucleotidyltransfera... 42 0.010
UniRef50_A5GII1 Cluster: Ribonuclease PH; n=3; Synechococcus|Rep... 42 0.013
UniRef50_O96177 Cluster: Putative uncharacterized protein PFB041... 42 0.013
UniRef50_A1RXQ5 Cluster: 3' exoribonuclease; n=1; Thermofilum pe... 42 0.013
UniRef50_Q5CR63 Cluster: RPR46-like RNAse PH domain; n=2; Crypto... 41 0.023
UniRef50_Q754G1 Cluster: AFR109Wp; n=1; Eremothecium gossypii|Re... 41 0.023
UniRef50_Q6C6V0 Cluster: Yarrowia lipolytica chromosome E of str... 41 0.023
UniRef50_Q01CT7 Cluster: Exosomal 3'-5' exoribonuclease complex,... 40 0.039
UniRef50_Q7MW79 Cluster: Polyribonucleotide nucleotidyltransfera... 40 0.052
UniRef50_Q616U0 Cluster: Putative uncharacterized protein CBG151... 40 0.052
UniRef50_Q5KHX8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.052
UniRef50_UPI0000E45B97 Cluster: PREDICTED: similar to Exosome co... 40 0.069
UniRef50_Q2QT85 Cluster: 3' exoribonuclease family, domain 1 con... 39 0.091
UniRef50_A3H8A6 Cluster: 3' exoribonuclease; n=1; Caldivirga maq... 39 0.091
UniRef50_A7RP27 Cluster: Predicted protein; n=1; Nematostella ve... 39 0.12
UniRef50_UPI0000D55D29 Cluster: PREDICTED: similar to Exosome co... 38 0.16
UniRef50_O51745 Cluster: Polyribonucleotide nucleotidyltransfera... 38 0.16
UniRef50_A4RTW2 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.16
UniRef50_Q8ZVN0 Cluster: Probable exosome complex exonuclease 2;... 38 0.16
UniRef50_Q4SQL7 Cluster: Chromosome 17 SCAF14532, whole genome s... 38 0.21
UniRef50_Q74CS9 Cluster: Polyribonucleotide nucleotidyltransfera... 38 0.21
UniRef50_Q2S1P1 Cluster: Polyribonucleotide nucleotidyltransfera... 38 0.21
UniRef50_A4RT74 Cluster: Predicted protein; n=2; Ostreococcus|Re... 38 0.21
UniRef50_A2FL81 Cluster: 3' exoribonuclease family, domain 1 con... 38 0.21
UniRef50_Q6CJI8 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 38 0.21
UniRef50_Q59LU3 Cluster: Potential exosome component Mtr3p; n=3;... 38 0.28
UniRef50_A6DU91 Cluster: Polynucleotide phosphorylase/polyadenyl... 37 0.37
UniRef50_Q965N3 Cluster: Putative uncharacterized protein; n=2; ... 37 0.37
UniRef50_O26778 Cluster: Probable exosome complex exonuclease 2;... 37 0.37
UniRef50_A0LE14 Cluster: Polyribonucleotide nucleotidyltransfera... 37 0.49
UniRef50_Q9SSE1 Cluster: MLP3.20 protein; n=5; core eudicotyledo... 37 0.49
UniRef50_Q7UR95 Cluster: Polyribonucleotide nucleotidyltransfera... 36 0.64
UniRef50_Q5DA97 Cluster: SJCHGC04772 protein; n=1; Schistosoma j... 36 0.64
UniRef50_Q6L224 Cluster: Ribonuclease PH; n=2; Thermoplasmatales... 36 0.64
UniRef50_Q5HPR7 Cluster: Polyribonucleotide nucleotidyltransfera... 36 0.64
UniRef50_UPI0000498B14 Cluster: exosome complex exonuclease; n=1... 36 0.85
UniRef50_Q92HV7 Cluster: Polyribonucleotide nucleotidyltransfera... 36 0.85
UniRef50_Q8KBY3 Cluster: Polyribonucleotide nucleotidyltransfera... 36 1.1
UniRef50_Q01D77 Cluster: Putative polynucleotide phosphorylase; ... 36 1.1
UniRef50_Q49X62 Cluster: Polyribonucleotide nucleotidyltransfera... 36 1.1
UniRef50_Q9HV59 Cluster: Polyribonucleotide nucleotidyltransfera... 36 1.1
UniRef50_Q8TCS8 Cluster: Polyribonucleotide nucleotidyltransfera... 36 1.1
UniRef50_Q9ZUI4 Cluster: T2K10.14 protein; n=10; Magnoliophyta|R... 35 1.5
UniRef50_Q8GZQ3 Cluster: Polynucleotide phosphorylase; n=10; cel... 35 1.5
UniRef50_A7CVE2 Cluster: Polyribonucleotide nucleotidyltransfera... 35 2.0
UniRef50_Q98S59 Cluster: Putative uncharacterized protein orf209... 35 2.0
UniRef50_Q96B26 Cluster: Exosome complex exonuclease RRP43; n=37... 35 2.0
UniRef50_Q8T4A9 Cluster: AT07738p; n=2; Sophophora|Rep: AT07738p... 34 2.6
UniRef50_Q4YZG1 Cluster: Putative uncharacterized protein; n=9; ... 34 2.6
UniRef50_Q2NEX4 Cluster: Putative exosome complex, exonuclease 2... 34 2.6
UniRef50_A6DA62 Cluster: Polynucleotide phosphorylase/polyadenyl... 34 3.4
UniRef50_Q7Q0D9 Cluster: ENSANGP00000011759; n=2; Culicidae|Rep:... 34 3.4
UniRef50_Q8TGX5 Cluster: Probable exosome complex exonuclease 2;... 34 3.4
UniRef50_Q7NW41 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_O59222 Cluster: Putative uncharacterized protein PH1550... 33 4.5
UniRef50_A7DRS4 Cluster: 3' exoribonuclease; n=1; Candidatus Nit... 33 4.5
UniRef50_A0RXU0 Cluster: RNase PH-related exoribonuclease; n=1; ... 33 4.5
UniRef50_Q9UXC0 Cluster: Probable exosome complex exonuclease 2;... 33 4.5
UniRef50_Q8U0M0 Cluster: Probable exosome complex exonuclease 2;... 33 4.5
UniRef50_A4EC74 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_Q54CU6 Cluster: Putative uncharacterized protein; n=1; ... 33 6.0
UniRef50_P87319 Cluster: Vacuolar protein sorting-associated pro... 33 6.0
UniRef50_UPI0000499D67 Cluster: exosome complex exonuclease 1; n... 33 7.9
UniRef50_Q127W8 Cluster: Polyribonucleotide nucleotidyltransfera... 33 7.9
>UniRef50_Q9NPD3 Cluster: Exosome complex exonuclease RRP41; n=32;
Eumetazoa|Rep: Exosome complex exonuclease RRP41 - Homo
sapiens (Human)
Length = 245
Score = 186 bits (454), Expect = 3e-46
Identities = 88/140 (62%), Positives = 106/140 (75%), Gaps = 2/140 (1%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ--A 411
M +LLS QG R+DGRR ELR+I+ ++GVF Q DGSAY+EQGNTK LA VYGPH+
Sbjct: 1 MAGLELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRG 60
Query: 412 SKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSP 591
S+++ + +VNCQYS ATFSTGERK RP GDRKS EM + LRQ AAI T+++PRS
Sbjct: 61 SRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQ 120
Query: 592 IDIYIXVLQADGGTYCASVN 651
IDIY+ VLQADGGTY A VN
Sbjct: 121 IDIYVQVLQADGGTYAACVN 140
>UniRef50_UPI0000DB6F09 Cluster: PREDICTED: similar to putative
exosome complex exonuclease RRP41; n=1; Apis
mellifera|Rep: PREDICTED: similar to putative exosome
complex exonuclease RRP41 - Apis mellifera
Length = 268
Score = 170 bits (413), Expect = 3e-41
Identities = 85/134 (63%), Positives = 98/134 (73%), Gaps = 6/134 (4%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSK-MSTEAV- 441
GLRLDGRR ELR+IR K+GVF Q DGSAY+E GNTK+L VYGPHQ S ST +
Sbjct: 12 GLRLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKIT 71
Query: 442 --VVNCQYSMATFS--TGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+VNCQYSMA FS +GERK +PRGDRKSQE S+ L+ A+ A I E+YPRS IDIY+
Sbjct: 72 KGIVNCQYSMAVFSLSSGERKRKPRGDRKSQERSLQLKHAMEAIIHLELYPRSQIDIYVE 131
Query: 610 VLQADGGTYCASVN 651
LQ DG YCASVN
Sbjct: 132 ALQVDGSEYCASVN 145
>UniRef50_UPI00015B5B6C Cluster: PREDICTED: similar to
ENSANGP00000009222; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000009222 - Nasonia
vitripennis
Length = 270
Score = 162 bits (394), Expect = 6e-39
Identities = 81/137 (59%), Positives = 96/137 (70%), Gaps = 6/137 (4%)
Frame = +1
Query: 259 SSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ----ASKSKM 426
S GLR DGRRP ELRRIR ++GVF Q DGSAYLEQG TK+LA VYGPHQ A+ + +
Sbjct: 8 SQGGLRADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANAL 67
Query: 427 STEAVVVNCQYSMATFS--TGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDI 600
+VNCQYS A FS GERK +PRGDRKSQE S LR A+ A I E++ RS IDI
Sbjct: 68 KAVKGIVNCQYSTAVFSFGAGERKKKPRGDRKSQERSQQLRHAMEAIINLELFARSQIDI 127
Query: 601 YIXVLQADGGTYCASVN 651
++ VLQ DG +C +VN
Sbjct: 128 FVEVLQVDGSDFCVAVN 144
>UniRef50_Q4SLK0 Cluster: Chromosome 15 SCAF14556, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 15
SCAF14556, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 291
Score = 159 bits (385), Expect(2) = 2e-38
Identities = 78/142 (54%), Positives = 97/142 (68%), Gaps = 17/142 (11%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-- 411
M +LLS QG R+DGR+ ELR+I+ ++GVF Q DGSAYLEQGNTK LA VYGPH+
Sbjct: 1 MAGLELLSDQGYRIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKALAVVYGPHEVCV 60
Query: 412 ---------------SKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQ 546
S+S+ + V+NCQYSMATFST ERK RP GDRKS EMS+HL+Q
Sbjct: 61 CVCVCVCVCVCQMRGSRSRARHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQ 120
Query: 547 ALTAAIKTEMYPRSPIDIYIXV 612
AA+ T+++PRS IDIY+ V
Sbjct: 121 TFEAAVMTQLFPRSQIDIYVKV 142
Score = 23.0 bits (47), Expect(2) = 2e-38
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 604 IXVLQADGGTYCASVN 651
+ +LQ+DGG Y VN
Sbjct: 171 LQILQSDGGNYSVCVN 186
>UniRef50_Q54EU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 247
Score = 143 bits (347), Expect = 3e-33
Identities = 70/141 (49%), Positives = 99/141 (70%), Gaps = 3/141 (2%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK 417
M +S +GLR+DGRR NELRRI ++G+F + DGSAY EQGNTK++AAVYGP + S
Sbjct: 1 MSKLSYISPEGLRIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISV 60
Query: 418 S-KMSTEAVVVNCQYSMATFSTGERK--NRPRGDRKSQEMSMHLRQALTAAIKTEMYPRS 588
S K + VV C++S ++FST ERK + +GDR + E++ ++QA + I T +YPRS
Sbjct: 61 SGKGVFDRAVVKCEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRS 120
Query: 589 PIDIYIXVLQADGGTYCASVN 651
I+IY+ VLQ+DGG A++N
Sbjct: 121 QINIYLQVLQSDGGLKAAAIN 141
>UniRef50_Q9SP08 Cluster: Exonuclease RRP41; n=5; Magnoliophyta|Rep:
Exonuclease RRP41 - Arabidopsis thaliana (Mouse-ear
cress)
Length = 241
Score = 140 bits (339), Expect = 3e-32
Identities = 72/137 (52%), Positives = 100/137 (72%), Gaps = 3/137 (2%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ---ASKS 420
+ ++ +GLRLDGRR NE+R+I ++GV ++ DGSA E GNTKV+AAVYGP + S+
Sbjct: 2 EYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQ 61
Query: 421 KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDI 600
K + AVV+ C+YSMA FSTG+R+ R + DR+S E+S+ +RQ + A I TE+ P S IDI
Sbjct: 62 KKNDHAVVL-CEYSMAQFSTGDRR-RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119
Query: 601 YIXVLQADGGTYCASVN 651
++ VLQADGGT A +N
Sbjct: 120 FLQVLQADGGTRSACIN 136
>UniRef50_Q17533 Cluster: Putative exosome complex exonuclease
RRP41; n=2; Caenorhabditis|Rep: Putative exosome complex
exonuclease RRP41 - Caenorhabditis elegans
Length = 240
Score = 140 bits (338), Expect = 4e-32
Identities = 66/134 (49%), Positives = 86/134 (64%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 429
+++S G R+DGRRP ++R I +LG+ +GS YLE GNTKVL AVYGP++ SK
Sbjct: 2 NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+ + CQYS FS ERKNR RGDRKS E+S L +A + I TE +PRS +DI+
Sbjct: 62 EDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCE 121
Query: 610 VLQADGGTYCASVN 651
V+Q DG A VN
Sbjct: 122 VIQGDGSNLAACVN 135
>UniRef50_Q9UXC2 Cluster: Probable exosome complex exonuclease 1;
n=16; Archaea|Rep: Probable exosome complex exonuclease
1 - Sulfolobus solfataricus
Length = 248
Score = 118 bits (284), Expect = 1e-25
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS- 429
L+ G R DGR+P+ELR I+ +LGV DGSA E GNTK +AAVYGP + +S
Sbjct: 12 LILDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSL 71
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+ V+ +Y M FST ERKN P R+ E+S +R+AL +A+ E++PR+ ID++
Sbjct: 72 PDRAVLRVRYHMTPFSTDERKN-PAPSRREIELSKVIREALESAVLVELFPRTAIDVFTE 130
Query: 610 VLQADGGTYCASV 648
+LQAD G+ S+
Sbjct: 131 ILQADAGSRLVSL 143
>UniRef50_A0RXU1 Cluster: RNase PH; n=1; Cenarchaeum symbiosum|Rep:
RNase PH - Cenarchaeum symbiosum
Length = 243
Score = 117 bits (281), Expect = 3e-25
Identities = 54/133 (40%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKMS 429
LL G+R DGR+ +E RR+ GV +GSAY+E G+ K+LA ++GP K +
Sbjct: 10 LLDENGIRCDGRKISETRRVEITAGVLNNANGSAYIEFGDNKILAGIFGPRDVHPKHMVR 69
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
TE ++ C+Y M+ FS ERK +P R+ E+S +++AL ++ E +PR+ +D++I
Sbjct: 70 TETGILRCRYHMSPFSVSERK-KPAPSRREIEISKVIKEALEPSLMLEQFPRTAVDVFIE 128
Query: 610 VLQADGGTYCASV 648
VLQADGG+ CA++
Sbjct: 129 VLQADGGSRCAAL 141
>UniRef50_Q6L223 Cluster: Ribonuclease PH; n=2;
Thermoplasmatales|Rep: Ribonuclease PH - Picrophilus
torridus
Length = 239
Score = 116 bits (280), Expect = 4e-25
Identities = 62/137 (45%), Positives = 83/137 (60%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK 417
M L++ GLRLDGR NE+R IR GV DGSAY+E G K++ AVY K
Sbjct: 1 MEEVKLINDDGLRLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPK 60
Query: 418 SKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPID 597
+ + +V +Y+MA FS ERK RP DR++ E+S + +AL +AI E PR+ ID
Sbjct: 61 HAQNIDKAIVKARYNMAGFSVEERK-RPGPDRRTMEISKLISEALESAIMVERLPRAEID 119
Query: 598 IYIXVLQADGGTYCASV 648
+YI VL+AD GT AS+
Sbjct: 120 VYIEVLEADAGTRIASL 136
>UniRef50_Q8PTT8 Cluster: Probable exosome complex exonuclease 1;
n=23; Archaea|Rep: Probable exosome complex exonuclease
1 - Methanosarcina mazei (Methanosarcina frisia)
Length = 493
Score = 116 bits (280), Expect = 4e-25
Identities = 56/134 (41%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKMS 429
L++ GLRLDGRR +E+R ++ ++GV ++ DGS YLE G K+L V+GP +A +
Sbjct: 10 LITDDGLRLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQR 69
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
++ V+ +Y+MA+FS +R RP R+S E+S R+A I E++P++ IDI++
Sbjct: 70 ADSAVIRYRYNMASFSVEDRA-RPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVE 128
Query: 610 VLQADGGTYCASVN 651
VLQAD GT A++N
Sbjct: 129 VLQADAGTRTAAIN 142
>UniRef50_UPI00005A29C6 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP41 (Ribosomal RNA processing
protein 41) (Exosome component 4) (p12A) isoform 3; n=1;
Canis lupus familiaris|Rep: PREDICTED: similar to
Exosome complex exonuclease RRP41 (Ribosomal RNA
processing protein 41) (Exosome component 4) (p12A)
isoform 3 - Canis familiaris
Length = 226
Score = 114 bits (274), Expect = 2e-24
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +1
Query: 406 QASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPR 585
+ S+++ + +VNCQYS ATFSTGERK RP GDRKS EM +HLRQ AAI T+++PR
Sbjct: 40 RGSRARALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPR 99
Query: 586 SPIDIYIXVLQADGGTYCASVN 651
S IDIY+ VLQADGGTY A VN
Sbjct: 100 SQIDIYVQVLQADGGTYAACVN 121
>UniRef50_A7DRS3 Cluster: Exosome complex exonuclease 1; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Exosome
complex exonuclease 1 - Candidatus Nitrosopumilus
maritimus SCM1
Length = 244
Score = 114 bits (274), Expect = 2e-24
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS- 429
L+ G R DGR +E RRI K G DGS+Y+E G+ K+L V+GP MS
Sbjct: 10 LMDENGKRCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSD 69
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
T+ ++ +Y M FS GERKN P R+ E+S +++AL A+ E +PR+ +D++I
Sbjct: 70 TDTGILRVRYHMEPFSVGERKN-PAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIE 128
Query: 610 VLQADGGTYCASV 648
VLQADGGT CA++
Sbjct: 129 VLQADGGTRCAAL 141
>UniRef50_O42872 Cluster: Putative exosome complex exonuclease
RRP41; n=1; Schizosaccharomyces pombe|Rep: Putative
exosome complex exonuclease RRP41 - Schizosaccharomyces
pombe (Fission yeast)
Length = 242
Score = 113 bits (273), Expect = 3e-24
Identities = 56/135 (41%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ-ASKSKM 426
++LS +GLR DGRR +E+R +C++G+ +GSA++E GNTKVL V GP + KSK
Sbjct: 5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKA 64
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
+ VN + ++A+FST + K R + DR+ Q + L+ I+TE+YPRS I +Y+
Sbjct: 65 RADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYL 124
Query: 607 XVLQADGGTYCASVN 651
VLQ DG + +N
Sbjct: 125 HVLQDDGAVMASCIN 139
>UniRef50_Q5BZN7 Cluster: SJCHGC06185 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06185 protein - Schistosoma
japonicum (Blood fluke)
Length = 251
Score = 110 bits (264), Expect = 3e-23
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKMSTEAVV 444
G R+DGRRPNELRR+ C+ G DG +L QGNTKV+A+V GPH +K + +
Sbjct: 1 GRRVDGRRPNELRRVHCQFGSGNS-DGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGAT 59
Query: 445 VNCQYSMATFST--GERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQ 618
+ CQ++ F++ GER+ DR + + S + + + ++TE YP S IDI++ V+Q
Sbjct: 60 IICQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQ 119
Query: 619 ADGGTYCASVN 651
+DG + +VN
Sbjct: 120 SDGSEFACAVN 130
>UniRef50_Q6CA11 Cluster: Yarrowia lipolytica chromosome D of strain
CLIB122 of Yarrowia lipolytica; n=6;
Saccharomycetales|Rep: Yarrowia lipolytica chromosome D
of strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 287
Score = 107 bits (258), Expect = 2e-22
Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVF-TQPDGSAYLEQGNTKVLAAVYGPHQASKSKM 426
++ S +GLR DGRR NE+R CK+ T DGS+Y+E G+TKV+ V GP + +
Sbjct: 51 EIYSPEGLRTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQN 110
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
+T+ V++ ++A+FST R R R D++ EM++ +RQ L A+ T++ PR+ I + I
Sbjct: 111 TTDRAVISVNVNVASFSTETRIKRQRNDKRLAEMNILIRQLLEEAVLTKLNPRTQIAVNI 170
Query: 607 XVLQADGGTYCASVN 651
V+ DGG A +N
Sbjct: 171 TVIAQDGGLLPACIN 185
>UniRef50_A7RQ94 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 268
Score = 100 bits (239), Expect = 3e-20
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 5/137 (3%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMST 432
L+ G R DGRRP+ELR + + GV +Q GSAY+E NTKV+ A+YGP +A + + +
Sbjct: 29 LIRKDGCRQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFS 88
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
+ C++ A FS R+ + D + +E S + QAL A+ E +P++ +DIYI V
Sbjct: 89 MKGRLTCEFKFAPFSCIYRRKHIQ-DAEEKENSYLVVQALEPAVCLEKFPKAQVDIYITV 147
Query: 613 LQADG-----GTYCASV 648
L+ DG G CASV
Sbjct: 148 LENDGSALSAGIICASV 164
>UniRef50_Q4P9I6 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 273
Score = 99 bits (238), Expect = 5e-20
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVF--TQPDGSAYLEQGNTKVLAAVYGPHQA 411
M +LL++ G R+DGR+ ELR I +LG T DG A + QG T V A V+GP +A
Sbjct: 1 MSRVELLNAGGFRIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREA 60
Query: 412 -SKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRS 588
S + + + VN + S+A + + ER+ R RGDR+ E + ++ I T +YPRS
Sbjct: 61 RSGANVMHDRASVNVEVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRS 120
Query: 589 PIDIYIXVLQADGGTYCASVN 651
IDI++ V Q DGG A++N
Sbjct: 121 QIDIFVQVHQQDGGVLPAAIN 141
>UniRef50_Q5KHU0 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 262
Score = 97.5 bits (232), Expect = 2e-19
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 1/135 (0%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKM 426
D+L+ GLR D RRP ELR +L + DGS+ QG T V +V+GP + ++
Sbjct: 7 DILNDGGLRQDARRPYELRSTSFQLSTHSSSDGSSTATQGLTTVEVSVFGPREPRNRGLA 66
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
S + VV+ + + ++ G R RGD++ QE+ +RQ I T +YPRS I I++
Sbjct: 67 SHDRAVVSVEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHV 126
Query: 607 XVLQADGGTYCASVN 651
VL ADGG S+N
Sbjct: 127 QVLSADGGILPTSIN 141
>UniRef50_P46948 Cluster: Exosome complex exonuclease RRP41; n=7;
Saccharomycetales|Rep: Exosome complex exonuclease RRP41
- Saccharomyces cerevisiae (Baker's yeast)
Length = 246
Score = 95.1 bits (226), Expect = 1e-18
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 3/141 (2%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQP-DGSAYLEQGNTKVLAAVYGPHQAS 414
M ++ S +GLRLDGRR NELRR + DGS+Y+EQGN K++ V GP +
Sbjct: 1 MSRLEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPR 60
Query: 415 -KSKMSTEAVVVNCQYSMATFSTGER-KNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRS 588
KS+M T ++N ++ FS ER K+ + +R+ E+ L + + +YPR+
Sbjct: 61 LKSQMDTSKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRT 120
Query: 589 PIDIYIXVLQADGGTYCASVN 651
IDI I VL+ DGG + +N
Sbjct: 121 VIDIEIHVLEQDGGIMGSLIN 141
>UniRef50_Q4Q1B7 Cluster: Exosome complex exonuclease RRP41,
putative; n=7; Trypanosomatidae|Rep: Exosome complex
exonuclease RRP41, putative - Leishmania major
Length = 246
Score = 92.3 bits (219), Expect = 9e-18
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-SKSKM 426
+ +S GLRLDGRRP E RR+ G + DGS + G +KV A V+GP ++ K +
Sbjct: 6 EYVSPAGLRLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEA 65
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
+ +V C+ ++A F+ R+N R + S+++ + Q + I YP S I IYI
Sbjct: 66 KHDKGLVTCEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYI 125
Query: 607 XVLQADGGTYCASVN 651
VLQ DG A VN
Sbjct: 126 EVLQQDGNEKIACVN 140
>UniRef50_A1DFF4 Cluster: Exosome complex endonuclease 1/ribosomal
RNA processing protein, putative; n=9;
Eurotiomycetidae|Rep: Exosome complex endonuclease
1/ribosomal RNA processing protein, putative -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 269
Score = 88.2 bits (209), Expect = 2e-16
Identities = 48/133 (36%), Positives = 75/133 (56%), Gaps = 6/133 (4%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ-----ASKSKMSTE 435
LRLDGRR NELR ++ ++ GS++L GNT ++ +V+GP + A+ +
Sbjct: 14 LRLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSA 73
Query: 436 AVVVNCQYSMATFSTGERKNRPRG-DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
VV ++A F+ +R+ R G DR+S ++ LR A + + T +YP S I I++ V
Sbjct: 74 GAVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSV 133
Query: 613 LQADGGTYCASVN 651
L ADG A+VN
Sbjct: 134 LSADGSLLAAAVN 146
>UniRef50_Q01E66 Cluster: Putative exonuclease RRP41; n=1;
Ostreococcus tauri|Rep: Putative exonuclease RRP41 -
Ostreococcus tauri
Length = 321
Score = 85.4 bits (202), Expect = 1e-15
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ---ASKS 420
+ +S +GLRLDGRR NE+RR R + Q DGSA E GNT + V GP +
Sbjct: 53 EYVSFEGLRLDGRRANEIRRPRHAFAIDAQCDGSARFELGNTVIECRVDGPSERKFGGAE 112
Query: 421 KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDI 600
+ ++EA + C + + F++ + +GD +S++ L +ALT+A+ ++ PR + +
Sbjct: 113 EGASEACALTCSHGRSAFASDGVQAGRKGDGRSKQFESVLAKALTSAVCVDLMPRCEVQV 172
Query: 601 YIXVLQADGGTYCAS 645
VL DGG AS
Sbjct: 173 RTTVLCDDGGARAAS 187
>UniRef50_Q55BB0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 217
Score = 85.0 bits (201), Expect = 1e-15
Identities = 41/110 (37%), Positives = 66/110 (60%)
Frame = +1
Query: 319 KLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNR 498
K+GV +Q GS+Y+E NTKVL ++GP K+++ E +NC+ TFS+ K
Sbjct: 2 KIGVVSQGSGSSYVEMENTKVLCTIHGPRATQKTELF-ETAKLNCELKYTTFSSTTEKID 60
Query: 499 PRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASV 648
+ K +++S+ + Q++ +I+ E YP++ IDIYI VL DG AS+
Sbjct: 61 YVENSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASI 110
>UniRef50_UPI00015B4338 Cluster: PREDICTED: similar to exosomal 3-5
exoribonuclease complex subunit Rrp41-like protein; n=1;
Nasonia vitripennis|Rep: PREDICTED: similar to exosomal
3-5 exoribonuclease complex subunit Rrp41-like protein -
Nasonia vitripennis
Length = 284
Score = 84.6 bits (200), Expect = 2e-15
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ-ASKSKMSTEAVVVN 450
R+D R+ ELR++ KLGV +Q GSAY+E G TKV+ + + P + +K+ ST+ +
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIF- 97
Query: 451 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGG 630
C++ A+F+T +RK + D + +E S+ +++AL A+ +P +D+Y VL G
Sbjct: 98 CEFKFASFATCKRKGHQQ-DTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDNGGS 156
Query: 631 TYCASV 648
A++
Sbjct: 157 ALGAAI 162
>UniRef50_UPI00006CFE64 Cluster: 3'''' exoribonuclease family,
domain 1 containing protein; n=1; Tetrahymena
thermophila SB210|Rep: 3'''' exoribonuclease family,
domain 1 containing protein - Tetrahymena thermophila
SB210
Length = 240
Score = 84.2 bits (199), Expect = 2e-15
Identities = 48/134 (35%), Positives = 71/134 (52%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 429
D L Q R DGR+ NELR++ C LG +GS L QG T+++ + GPH +KS
Sbjct: 4 DFLVLQEFREDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPH--NKSTRR 61
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+N QY++A FS +R+ + D+ E + +LR + + I TE IDI +
Sbjct: 62 ESEGFLNVQYNVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVS 121
Query: 610 VLQADGGTYCASVN 651
V+QADG + N
Sbjct: 122 VIQADGSAKSSIFN 135
>UniRef50_Q1HQF7 Cluster: Exosomal 3'-5' exoribonuclease complex
subunit Rrp41-like protein; n=3; Culicidae|Rep: Exosomal
3'-5' exoribonuclease complex subunit Rrp41-like protein
- Aedes aegypti (Yellowfever mosquito)
Length = 307
Score = 84.2 bits (199), Expect = 2e-15
Identities = 44/134 (32%), Positives = 69/134 (51%)
Frame = +1
Query: 247 ADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKM 426
AD+ G R GR+ NE R+ KLGV + GS YLE GNTKV+ +V+ P + K
Sbjct: 33 ADVFEPSGKRKCGRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNK 92
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
+ C + + F+ RKN P+ D + + ++ + +AL + ++P IDI+
Sbjct: 93 FRALGELYCDFKFSPFACIHRKN-PQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFA 151
Query: 607 XVLQADGGTYCASV 648
VL+ DG A +
Sbjct: 152 NVLEDDGSVLAAVI 165
>UniRef50_UPI0000D569CA Cluster: PREDICTED: similar to CG8025-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG8025-PA
- Tribolium castaneum
Length = 282
Score = 83.8 bits (198), Expect = 3e-15
Identities = 43/134 (32%), Positives = 71/134 (52%)
Frame = +1
Query: 247 ADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKM 426
++++ G R DGR E R+I K GV +Q GSAY+E TKV+ +V+ P +
Sbjct: 33 SEIVQPNGTRADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTD 92
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
+ + C++ A FS +R+ + D + Q+ S ++QAL +A+ +P +DIY
Sbjct: 93 YSSKGEIYCEFKFAPFSCHKRRLHQQ-DAEEQQFSAIMKQALESAVFRHEFPNFQVDIYA 151
Query: 607 XVLQADGGTYCASV 648
VL DG A++
Sbjct: 152 MVLHNDGAALSAAI 165
>UniRef50_UPI0000498B51 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 238
Score = 83.0 bits (196), Expect = 6e-15
Identities = 46/134 (34%), Positives = 74/134 (55%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 429
+ +S +G RLDGRR E+R+ ++ + DGSA + GNT V A V+GP + +
Sbjct: 2 EYISPEGYRLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRNRE 61
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
++V+ YS ATF+T +R+ + DR E + L+Q I T++ P + ID+ +
Sbjct: 62 GAELMVS--YSQATFATRKRREQMH-DRTMIETAELLKQMYEQIIITKLLPETMIDLRVQ 118
Query: 610 VLQADGGTYCASVN 651
V+Q DG A +N
Sbjct: 119 VMQDDGSVTAAVIN 132
>UniRef50_A4R215 Cluster: Putative uncharacterized protein; n=7;
Pezizomycotina|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 280
Score = 81.8 bits (193), Expect = 1e-14
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 18/145 (12%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQAS------------ 414
LR+DGRR NELRR ++ DGS+YLE G+TKV+ V GP +A+
Sbjct: 13 LRVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITA 72
Query: 415 ------KSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEM 576
+ S EA VV +A FS+ +RK R RGD++ QE+ + AL+A + T +
Sbjct: 73 TATGGGQGAQSKEAEVV-VSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHL 131
Query: 577 YPRSPIDIYIXVLQADGGTYCASVN 651
+ S I + VL DG A +N
Sbjct: 132 FQHSTITFSLHVLSQDGSLLAALIN 156
>UniRef50_Q8ILI7 Cluster: Exosome complex exonuclease rrp41,
putative; n=5; Plasmodium|Rep: Exosome complex
exonuclease rrp41, putative - Plasmodium falciparum
(isolate 3D7)
Length = 246
Score = 80.6 bits (190), Expect = 3e-14
Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 3/141 (2%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLG---VFTQPDGSAYLEQGNTKVLAAVYGPHQ 408
M ++ +G R+DGR+ +E R I+ LG DG ++ E GNTK+ A + GP++
Sbjct: 1 MSIVQYINDEGYRIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNE 60
Query: 409 ASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRS 588
+ E +V C ++ F+ E+K + D ++E+S ++R I ++Y S
Sbjct: 61 YRRPD---EKCLVKCNVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNS 117
Query: 589 PIDIYIXVLQADGGTYCASVN 651
I+I++ +++ DGG A+VN
Sbjct: 118 EINIFLYIIERDGGLKAAAVN 138
>UniRef50_Q5CPV0 Cluster: Archeo-eukaryotic exosomal RNAse; n=2;
Cryptosporidium|Rep: Archeo-eukaryotic exosomal RNAse -
Cryptosporidium parvum Iowa II
Length = 351
Score = 80.2 bits (189), Expect = 4e-14
Identities = 42/140 (30%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQ---PDGSAYLEQGNTKVLAAVYGPHQASKS 420
++++ G+R DGR+ E+RRI+C + Q DG+ Y EQG K++ ++ GP S +
Sbjct: 91 EIVNKHGIRQDGRKLTEIRRIKCIINEGNQRGIEDGNVYFEQGQNKLIVSIVGPVPISGN 150
Query: 421 ---KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSP 591
+ V +NC + ++ FS+ +R+ R + DR E + + + ++ I + Y +S
Sbjct: 151 INYTNNNSGVQINCNFRVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVI-CDQYSKSQ 209
Query: 592 IDIYIXVLQADGGTYCASVN 651
I I I +L+ DG A++N
Sbjct: 210 IIINIIILEGDGSVRSAAIN 229
>UniRef50_A2DCK7 Cluster: 3' exoribonuclease family, domain 1
containing protein; n=1; Trichomonas vaginalis G3|Rep:
3' exoribonuclease family, domain 1 containing protein -
Trichomonas vaginalis G3
Length = 241
Score = 79.0 bits (186), Expect = 9e-14
Identities = 40/128 (31%), Positives = 68/128 (53%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVV 447
GLR+DGR PNE+R + K+G GS++ + G T+V+A ++GP ++ A +
Sbjct: 9 GLRIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPRD---NRSGDNAAEI 65
Query: 448 NCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
+ A F+ + R+ +E + +++ AIK E++P S I I I V+Q DG
Sbjct: 66 RVTFEYADFAKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQDDG 125
Query: 628 GTYCASVN 651
A++N
Sbjct: 126 SCQSAAIN 133
>UniRef50_Q6P0I8 Cluster: Exosome complex exonuclease MTR3; n=1;
Danio rerio|Rep: Exosome complex exonuclease MTR3 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 271
Score = 73.7 bits (173), Expect = 3e-12
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Frame = +1
Query: 259 SSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK---SKMS 429
S QG+R +G ++R + + G+ +Q GSAY+E GNTK++ +VYGP + + + M
Sbjct: 32 SRQGVRGNG----DVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMK 87
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
T +V C + +A FS +R +G + +++S L ++L + YPRS ID+ +
Sbjct: 88 TGRLV--CDFRLAPFSCVKRGAWIQGS-EERDLSATLMESLRPGVCLHRYPRSQIDVNVM 144
Query: 610 VLQADGGTYCASV 648
VL+ DG +V
Sbjct: 145 VLENDGSVLAHAV 157
>UniRef50_Q5CWV7 Cluster: Archeo-eukaryotice exosomal RNAse PH; n=3;
Cryptosporidium|Rep: Archeo-eukaryotice exosomal RNAse
PH - Cryptosporidium parvum Iowa II
Length = 303
Score = 72.5 bits (170), Expect = 8e-12
Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN 450
+R D R+ ELR I + GV DGSAY GNTKVL +YGP+ ++ + + + V+
Sbjct: 46 IRNDDRQFEELRPITIRTGVIENADGSAYFSIGNTKVLCGIYGPNLCKQNPIE-DGLSVS 104
Query: 451 CQYSMATFS-----TGERKNRPRGDRKSQE--MSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+Y++ +F + N + KS E S+ L + +++ I E Y RS ID Y
Sbjct: 105 VEYTIGSFCRDSALAKSKVNTENIEIKSDEKIKSILLEKVISSVICHEKYKRSSIDCYFY 164
Query: 610 VLQADGGTYCASVN 651
++ DG + A+++
Sbjct: 165 IIDDDGSAFSAAIS 178
>UniRef50_Q01B24 Cluster: Ribonuclease PH; n=2; Ostreococcus|Rep:
Ribonuclease PH - Ostreococcus tauri
Length = 693
Score = 71.7 bits (168), Expect = 1e-11
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 12/148 (8%)
Frame = +1
Query: 241 PAADLLSSQGLRLDGRRPNE-LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK 417
P+ + Q R DGR +E LR + L ++ GS+Y+E GNTKV AVYGP +
Sbjct: 450 PSTRAVVMQTPRSDGRASDEHLRALSVALDTNSRASGSSYVELGNTKVSCAVYGPRRPRV 509
Query: 418 SKMSTEAVVVNCQYSMATFS--------TGERKNRPRGDRKSQ---EMSMHLRQALTAAI 564
++ V++ F+ G R + +S E+S + L A
Sbjct: 510 DDLTVNTGVIDVDVFRVPFARKRAIHVERGRENEREKDLNRSAADVELSARIADVLRACA 569
Query: 565 KTEMYPRSPIDIYIXVLQADGGTYCASV 648
TE +PR+ +D+Y+ ++ +DGG ASV
Sbjct: 570 LTETFPRAQVDVYVTIMDSDGGEVVASV 597
>UniRef50_Q74NF6 Cluster: NEQ248; n=1; Nanoarchaeum equitans|Rep:
NEQ248 - Nanoarchaeum equitans
Length = 233
Score = 70.5 bits (165), Expect = 3e-11
Identities = 46/127 (36%), Positives = 65/127 (51%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN 450
+R DGR NE+R K+GV ++ DGSAY GNT +AAVY K E +
Sbjct: 1 MRFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVY-------LKPGREQSNLK 53
Query: 451 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGG 630
Y M F+ ERK R+ E+S + +AL AI E P I+ + +++AD G
Sbjct: 54 VSYRMLPFAGEERKGLGL-TRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAG 112
Query: 631 TYCASVN 651
T A++N
Sbjct: 113 TRVAAIN 119
>UniRef50_Q5RKV6 Cluster: Exosome complex exonuclease MTR3; n=9;
Tetrapoda|Rep: Exosome complex exonuclease MTR3 - Homo
sapiens (Human)
Length = 272
Score = 70.5 bits (165), Expect = 3e-11
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 12/132 (9%)
Frame = +1
Query: 286 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSK-------MSTEAVV 444
R P LR + + G+ +Q GSAYLE G TKVL AV GP QA + EA
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPA 90
Query: 445 -----VNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+ C + A F+ G R+ P G + +E+++ L++AL A++ YPR+ +++
Sbjct: 91 ALRGRLLCDFRRAPFA-GRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSAL 149
Query: 610 VLQADGGTYCAS 645
+L+ DGG+ A+
Sbjct: 150 LLE-DGGSALAA 160
>UniRef50_Q4P5R4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 297
Score = 69.3 bits (162), Expect = 7e-11
Identities = 40/118 (33%), Positives = 67/118 (56%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R D R ++LR I + + GS+Y+E G+ K+ +V+GP Q + S +A + N
Sbjct: 38 RPDQRSYSQLRPIFLQTHLVPSASGSSYVEIGDLKLACSVFGPRQVKGRQYSGKAEL-NV 96
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
+ A FS+ R+ RP +S +S L QAL +++ ++ P++ +DI+I VLQ DG
Sbjct: 97 EVKFAPFSS-RRRRRPGKTTESAHLSGLLHQALLPSLRLDLLPKASLDIHIMVLQTDG 153
>UniRef50_Q4T603 Cluster: Chromosome undetermined SCAF9013, whole
genome shotgun sequence; n=2; Tetraodontidae|Rep:
Chromosome undetermined SCAF9013, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 276
Score = 68.1 bits (159), Expect = 2e-10
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Frame = +1
Query: 247 ADLLSSQGLRLDGRRPNE--LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQAS-K 417
AD G R DGR+ + +R + + G+ +Q GSAY+E G TK+L VYGP + K
Sbjct: 25 ADAAPPPGPRADGRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERK 84
Query: 418 SKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPID 597
+ + A FS ER + +G + ++ S L ++L A+ YPRS I+
Sbjct: 85 DETDMRCGRLTADVRFAPFSCPERGSWIQGS-QDRDFSSMLLESLQPAVCLHRYPRSQIE 143
Query: 598 IYIXVLQADGGTYCA 642
+++ VL+ +GG+ A
Sbjct: 144 VHLVVLE-NGGSVLA 157
>UniRef50_A2RVK7 Cluster: At4g27490; n=7; Magnoliophyta|Rep:
At4g27490 - Arabidopsis thaliana (Mouse-ear cress)
Length = 256
Score = 68.1 bits (159), Expect = 2e-10
Identities = 38/118 (32%), Positives = 63/118 (53%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR ++ R + G + GSAY E GNTKV+ +V+GP ++ K+ + ++ +NC
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
S F++ D K E S L +AL I E +P++ +D++ VL++ G
Sbjct: 94 NVSYTNFASPTLGQGT--DHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESGG 147
>UniRef50_Q9P7R3 Cluster: Ribonuclease PH-like; n=1;
Schizosaccharomyces pombe|Rep: Ribonuclease PH-like -
Schizosaccharomyces pombe (Fission yeast)
Length = 257
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/114 (31%), Positives = 63/114 (55%)
Frame = +1
Query: 286 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSM 465
R + R+I KLG T+ GS+Y E K+ V GP + SK+ + +NC++ +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGP-RPSKTFAFRSSAKLNCEFRL 88
Query: 466 ATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
+ FST R+ + + + S + A++ +I +YP+S ID+YI V+++DG
Sbjct: 89 SPFSTSVRQGHVQ-TVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDG 141
>UniRef50_A7AQY6 Cluster: Exosome complex exonuclease rrp41,
putative; n=1; Babesia bovis|Rep: Exosome complex
exonuclease rrp41, putative - Babesia bovis
Length = 259
Score = 64.1 bits (149), Expect = 3e-09
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Frame = +1
Query: 238 MPAADLLSSQGLRLDGRRPNELRRI------RCKLGVFTQPDGSAYLEQGNTKVLAAVYG 399
M + +S +GLR+DGRRP+E+R I C + + DG A + QG TKV A + G
Sbjct: 1 MSKIEYISLEGLRIDGRRPSEVRHIDILCGPECGVDIINY-DGVAQVTQGLTKVQAFING 59
Query: 400 PHQ--ASKSKMSTEAVVVNCQYSMATFSTGERKNR-PRGDRKSQEMSMHLRQALTAAIKT 570
P SK+K E + ERK+ R + + E+S + I +
Sbjct: 60 PTDIGRSKTKEGFETADSPVEIRCEVCIPSERKSMGHRNNDATVEISRAVVGTFEPVIIS 119
Query: 571 EMYPRSPIDIYIXVLQADGGTYCASVN 651
+Y S I I++ VL+ADGG +N
Sbjct: 120 HLYKNSTIHIFVNVLEADGGVKATVIN 146
>UniRef50_UPI0000D56AF5 Cluster: PREDICTED: similar to exosome
component 5; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to exosome component 5 - Tribolium castaneum
Length = 172
Score = 63.3 bits (147), Expect = 5e-09
Identities = 36/112 (32%), Positives = 57/112 (50%)
Frame = +1
Query: 316 CKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKN 495
CKLG+ ++PDGS QG T V+A VYGP ++ +K E V + + G +
Sbjct: 8 CKLGILSRPDGSVLFSQGTTTVVAGVYGPVESKANKALVEKACVEAHFRPKSGLPGVK-- 65
Query: 496 RPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
DR ++ + +R AAI T MYPR+ + + I +Q +G ++N
Sbjct: 66 ----DRLNESI---IRNVCEAAIATAMYPRTSVVVVIQEMQNNGQLISCALN 110
>UniRef50_Q1HPJ2 Cluster: MRNA transport regulator 3; n=1; Bombyx
mori|Rep: MRNA transport regulator 3 - Bombyx mori (Silk
moth)
Length = 268
Score = 62.5 bits (145), Expect = 9e-09
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = +1
Query: 334 TQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPR-GD 510
+Q GSAY+E TKV+ +V+ P + + + C+ A FS RK RP D
Sbjct: 25 SQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAPFSC-PRKRRPYVPD 83
Query: 511 RKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
+ + +S+ LRQAL A+ +P ID+ I +L+ DG A++N
Sbjct: 84 VEEKALSVALRQALEPAVCRHFFPDYQIDVLIYILEHDGSCLAAAIN 130
>UniRef50_Q9VW53 Cluster: CG8025-PA; n=3; Sophophora|Rep: CG8025-PA
- Drosophila melanogaster (Fruit fly)
Length = 326
Score = 62.1 bits (144), Expect = 1e-08
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Frame = +1
Query: 265 QGLRLDGRRPNEL--RRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK-SKMSTE 435
+ L R P +L R + GV T GSAY+E GNTKVLA V P + + S
Sbjct: 33 ESLDKPSREPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMN 92
Query: 436 AVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVL 615
V+NC + A FSTG+ + P +R +S L +A+ + + +DI + +L
Sbjct: 93 MGVLNCYVNFAAFSTGDLDSVPERER---HLSSMLTKAMEPVVCRTEFLNFQLDIRVLIL 149
Query: 616 QADGGTYCASVN 651
DG ++N
Sbjct: 150 DDDGCLLSTAIN 161
>UniRef50_Q5KA82 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 268
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/125 (31%), Positives = 60/125 (48%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 429
D + R D R E R I K G+ +Q GS Y+E G K+ +VYGP K
Sbjct: 26 DAQAGPSTRTD-RTDQESRPIFLKTGLISQAHGSGYIEAGGVKIACSVYGPR--PKPPPY 82
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
+ +N + A F++ R+ P D + +S L Q L + + P+S ID+Y+
Sbjct: 83 SPQGTLNLEVKFAPFASDPRR-APLRDTEPLPLSNLLTQLLLPTLHLHLLPKSSIDVYLL 141
Query: 610 VLQAD 624
VL++D
Sbjct: 142 VLESD 146
>UniRef50_Q7SAL5 Cluster: Putative uncharacterized protein
NCU08026.1; n=3; Sordariomycetes|Rep: Putative
uncharacterized protein NCU08026.1 - Neurospora crassa
Length = 286
Score = 61.3 bits (142), Expect = 2e-08
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 8/129 (6%)
Frame = +1
Query: 262 SQGLRLDGRRP-NELRRIRCKLGVFTQPDGSAYLE---QGN----TKVLAAVYGPHQASK 417
S+G ++ RP N +R++ K GV GSAYLE GN K+ +V+GP +
Sbjct: 27 SEGFKVTRSRPANVIRKMYLKTGVTPSASGSAYLEIESSGNGGSGLKLSCSVHGPRALPR 86
Query: 418 SKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPID 597
S + ++++ A F+T +R+ R D +++ HL AL +I + +P+S +D
Sbjct: 87 STPFSPHIILSTHVKFAPFATKQRRGYIR-DPIERDLGTHLETALRGSIIADRWPKSGVD 145
Query: 598 IYIXVLQAD 624
I I +++ +
Sbjct: 146 IIISIVEGE 154
>UniRef50_Q54Q83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 237
Score = 60.5 bits (140), Expect = 3e-08
Identities = 40/132 (30%), Positives = 67/132 (50%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTE 435
+ ++ R DGR N +R + + G + DGSA Q +KVLAAVYGP + + ++ E
Sbjct: 1 MKTEHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSAR--KE 58
Query: 436 AVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVL 615
++ + Y TF T N D+ E + ++ A+ + I T +YPR+ I + + V
Sbjct: 59 KILKS--YVEVTF-TPAFGNTNYIDK---EKELLIKNAVESMILTTLYPRTQISVILQVF 112
Query: 616 QADGGTYCASVN 651
DG ++N
Sbjct: 113 SDDGSIVSCAIN 124
>UniRef50_Q4DJB2 Cluster: Ribosomal RNA processing protein 41B,
putative; n=2; Trypanosoma cruzi|Rep: Ribosomal RNA
processing protein 41B, putative - Trypanosoma cruzi
Length = 285
Score = 60.5 bits (140), Expect = 3e-08
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGP---HQASKSKM 426
+S LR DGR E+R + TQ DGSA+ QG T V+AAV GP Q K
Sbjct: 1 MSRASLRRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAARQEDYRKC 60
Query: 427 STEAVV---VNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPID 597
+ V V + T + R R E+ M L ++ A ++ + +PR ++
Sbjct: 61 GVQVYVNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLE 120
Query: 598 IYIXVLQADGGTYCASVN 651
+++ +L DG + N
Sbjct: 121 VHVTILADDGALLSVATN 138
>UniRef50_A0D7C7 Cluster: Chromosome undetermined scaffold_4, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_4,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 227
Score = 60.1 bits (139), Expect = 5e-08
Identities = 38/126 (30%), Positives = 65/126 (51%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR ++R I KL + DGS +QG T+V+ V GP ++K +E +++
Sbjct: 5 RQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGP----RAKTQSELLLI-- 58
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
+YS++ FS E K + D+ + +L+++ I + +S I I + V+Q DG +
Sbjct: 59 EYSVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGSS 118
Query: 634 YCASVN 651
A N
Sbjct: 119 KSAVFN 124
>UniRef50_Q6BY29 Cluster: Debaryomyces hansenii chromosome A of
strain CBS767 of Debaryomyces hansenii; n=2;
Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
A of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 290
Score = 60.1 bits (139), Expect = 5e-08
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Frame = +1
Query: 286 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQY-- 459
+R +E+R++ K G+ T +GSAYLE G+T + +V+GP S + + V C++
Sbjct: 41 KRNDEVRKMFLKSGLVTNANGSAYLEVGDTIIEVSVFGPRPIRGSFIDRASFSVECKFLP 100
Query: 460 -----SMATF---STGERKN-RPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
+ TF +T N RP Q++S +L +L I E YP+S IDI++ V
Sbjct: 101 YVTQPNEITFNGKATNFNNNGRPSLTNIEQKISSYLETSLLPCILLEKYPKSTIDIFVSV 160
Query: 613 LQAD 624
+ +
Sbjct: 161 ISTN 164
>UniRef50_A7P578 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=6; Magnoliophyta|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 59.7 bits (138), Expect = 6e-08
Identities = 37/126 (29%), Positives = 57/126 (45%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR N+LR + C + + GSA QG+TKVLAAVYGP +K + E +
Sbjct: 5 RDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKACIEV 64
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
+ T G + +E + L++ L + + P + I I V+ DG
Sbjct: 65 VWKPKTGQIG---------KPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGAL 115
Query: 634 YCASVN 651
++N
Sbjct: 116 LPCAIN 121
>UniRef50_Q2UDE6 Cluster: Predicted protein; n=11;
Pezizomycotina|Rep: Predicted protein - Aspergillus
oryzae
Length = 324
Score = 58.8 bits (136), Expect = 1e-07
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 20/156 (12%)
Frame = +1
Query: 217 VFVRS*IMPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAA-- 390
VF S + A+D+ + + R R+PNELR+I K G+ GSAYLE + LAA
Sbjct: 18 VFASS-LNSASDIATGRPQRQ--RQPNELRKIFLKTGLIPSASGSAYLEYEPSASLAAAR 74
Query: 391 ------------------VYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRK 516
V+GP +S + +V+ A F+ +RK R D
Sbjct: 75 SSPKSLIPPSSALKLACTVHGPKPLPRSATFSPNLVLTTHIKYAPFAARKRKGHIR-DAS 133
Query: 517 SQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQAD 624
+++ +HL AL I E +P+S +DI I +L+A+
Sbjct: 134 ERDLGVHLETALRGVIVAERWPKSGLDITITILEAE 169
>UniRef50_UPI0000519D91 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP46 (Ribosomal RNA-processing
protein 46) (Exosome component 5) (p12B) (Chronic
myelogenous leukemia tumor antigen 28); n=1; Apis
mellifera|Rep: PREDICTED: similar to Exosome complex
exonuclease RRP46 (Ribosomal RNA-processing protein 46)
(Exosome component 5) (p12B) (Chronic myelogenous
leukemia tumor antigen 28) - Apis mellifera
Length = 223
Score = 58.4 bits (135), Expect = 1e-07
Identities = 36/117 (30%), Positives = 56/117 (47%)
Frame = +1
Query: 301 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFST 480
LR + C+L + PDGSA L QGNT +A +YGP +A KM + + Y
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSYIPV---- 70
Query: 481 GERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
K + D + E M++++ AAI +P + I I I ++ GG ++N
Sbjct: 71 ---KGPAKIDDRMTE--MYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTIN 122
>UniRef50_A5KBP5 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 271
Score = 56.8 bits (131), Expect = 4e-07
Identities = 36/125 (28%), Positives = 60/125 (48%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R++ R+ NE+R + KLG D S + GNTK+LA +YGP SK+ + V
Sbjct: 32 RINNRKNNEIRDMFIKLGSDGYSDASCFYSLGNTKILALIYGPKPDSKNATYDKGKVFLE 91
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
S+ G D + + L + +++ I + YP+ I+I ++Q DGG
Sbjct: 92 IRSLNMNDDG------ANDESDENIKNLLIECVSSVILLDQYPQCSINIKCLIIQNDGGC 145
Query: 634 YCASV 648
A++
Sbjct: 146 LSATL 150
>UniRef50_Q17952 Cluster: Putative uncharacterized protein crn-5;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein crn-5 - Caenorhabditis elegans
Length = 214
Score = 56.4 bits (130), Expect = 6e-07
Identities = 36/117 (30%), Positives = 55/117 (47%)
Frame = +1
Query: 301 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFST 480
LR +RC+L DGSA QG T + A+ GP SK S EA+ ++ Y
Sbjct: 5 LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY------- 57
Query: 481 GERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
R N GD K ++ + L+ AI E++P + I + + +Q DG ++N
Sbjct: 58 --RAN--CGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAIN 110
>UniRef50_Q174Q5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 217
Score = 56.4 bits (130), Expect = 6e-07
Identities = 33/119 (27%), Positives = 57/119 (47%)
Frame = +1
Query: 295 NELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATF 474
N LR + C+L + T+ DGSA L QG T V+A+V GP + M+ E ++ +
Sbjct: 8 NSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYF----- 62
Query: 475 STGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
+ G + + ++ +AI T ++PR+ I I + +Q GG ++N
Sbjct: 63 ----KPRSGMGSVNDRLLESLIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVACAIN 117
>UniRef50_UPI0000E47A9B Cluster: PREDICTED: similar to exosome
component 6, partial; n=3; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to exosome component
6, partial - Strongylocentrotus purpuratus
Length = 203
Score = 45.2 bits (102), Expect(2) = 6e-06
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 319 KLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFST 480
K G +Q GS Y+E NTKV+ AVYGP + + + C++ ATF++
Sbjct: 2 KAGAVSQAKGSCYMEMKNTKVICAVYGPREVPRRDGFIINGQLRCEFKFATFAS 55
Score = 27.5 bits (58), Expect(2) = 6e-06
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 580 PRSPIDIYIXVLQADGGTYCASV 648
P+S +DI+I VL+ DG A++
Sbjct: 60 PKSQVDIFITVLENDGSVLSAAI 82
>UniRef50_Q4N8R6 Cluster: Exosome complex exonuclease rrp41,
putative; n=2; Theileria|Rep: Exosome complex
exonuclease rrp41, putative - Theileria parva
Length = 259
Score = 52.0 bits (119), Expect = 1e-05
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Frame = +1
Query: 235 IMPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQP-----DGSAYLEQGNTKVLAAVYG 399
+M D +S +GLR+DGRR +E R + G T DG + + QG KV + G
Sbjct: 25 LMSRIDYISIEGLRIDGRRKDEPRNTKLFFGSETSVDYLNYDGVSEILQGLNKVQVLIKG 84
Query: 400 PHQ----ASKS--KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAA 561
P + +K+ + E V ++C+ ++T + KN P +R ++++M ++
Sbjct: 85 PSELEVKGAKNVYGILEEKVDIHCEILLST--EKKVKNSP-NERLIKDLAMAVKSTYQEM 141
Query: 562 IKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
I + Y S I I+I V++ DG +N
Sbjct: 142 IISHCYKTSSISIFINVIEYDGSIKSTVLN 171
>UniRef50_UPI0000F2E71E Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 337
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +1
Query: 334 TQPDGSAYLEQGNTKVLAAVYGPH--QASKSKMSTEAVVVNCQYSMATFSTGERKNRPRG 507
T P L++ ++ GP + ++ + A C + A FS+ R+ P G
Sbjct: 72 TSPASKLSLKESLRRIAFVEMGPTIITTTTNQCQSTATSRQCDFRRAPFSSRGRRRPPSG 131
Query: 508 DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCAS 645
+ +E+S+ L++AL A++ + YPR+ +++ +LQ DGG+ A+
Sbjct: 132 SSEEKELSLALQEALGPAVQLQRYPRAQVEVSALLLQ-DGGSALAA 176
>UniRef50_O66593 Cluster: Polyribonucleotide nucleotidyltransferase;
n=2; Aquifex aeolicus|Rep: Polyribonucleotide
nucleotidyltransferase - Aquifex aeolicus
Length = 775
Score = 50.8 bits (116), Expect = 3e-05
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK--VLAAVYGPHQASKSKMSTEA 438
+G+R+DGR+PNE+R I ++ F +P G+A +G T+ V + P +A + E
Sbjct: 310 EGVRIDGRKPNEIRPIWIEVHPFERPHGNAIFTRGQTQAYVTVTLGTPDEALIIETIAEG 369
Query: 439 VVVN---CQYSMATFSTGERKNRPRGDRKSQEM--SMHLRQALTAAIKTEMYPRSPIDIY 603
V YSM FS GE K P G + +E+ +A+ + E I +
Sbjct: 370 EVFKRFMLHYSMPPFSVGEAK--PWGPPRRREIGHGALAERAIEPLLPPEEEYPFIIRVV 427
Query: 604 IXVLQADGGTYCASV 648
+L+++G T A+V
Sbjct: 428 SDILESNGSTSMATV 442
>UniRef50_A5CCD0 Cluster: TRNA nucleotidyltransferase; n=1; Orientia
tsutsugamushi Boryong|Rep: TRNA nucleotidyltransferase -
Orientia tsutsugamushi (strain Boryong) (Rickettsia
tsutsugamushi)
Length = 251
Score = 50.4 bits (115), Expect = 4e-05
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 4/130 (3%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVL-AAVYGPHQASKSKMSTEAVVV 447
+RL R+ +E+R I +LG GS + GNT V+ +A K + V
Sbjct: 1 MRLCSRKDSEMRPISIELGAMLNSKGSCLTKIGNTHVICSATVEESLPLFLKNKKQGGWV 60
Query: 448 NCQYSMATFSTGERKNRPRGDRKS---QEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQ 618
+YSM S+ +R R KS QE+ + +A+ AA+ ++ I I V+
Sbjct: 61 TAEYSMLPGSSLQRVKREGIQGKSGRTQEIQRLISRAMRAAVDLKLLGERQILIDCDVIN 120
Query: 619 ADGGTYCASV 648
ADGGT AS+
Sbjct: 121 ADGGTRAASI 130
>UniRef50_A5DL78 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 252
Score = 50.4 bits (115), Expect = 4e-05
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Frame = +1
Query: 319 KLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQY-SMATFSTGERKN 495
K G+ GSAY+E + V +VYGP S + + V C++ T E +N
Sbjct: 45 KTGLVDTASGSAYVEADDCIVQVSVYGPRPIRGSFIEKASFSVECKFLPYVTKVAAEHQN 104
Query: 496 -----RPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVL 615
+P + Q +S ++ AL + E YP+S IDIY+ V+
Sbjct: 105 TNPNGKPGMNSIEQRISTYVETALLPCLLLENYPKSTIDIYVTVI 149
>UniRef50_Q7QK69 Cluster: ENSANGP00000019439; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000019439 - Anopheles gambiae
str. PEST
Length = 226
Score = 50.0 bits (114), Expect = 5e-05
Identities = 32/117 (27%), Positives = 54/117 (46%)
Frame = +1
Query: 301 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFST 480
LRR+ C+ V ++ D SA L QG T+V+ A GP + +E + QY
Sbjct: 15 LRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQY------- 67
Query: 481 GERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
R N + D + + M ++++ + T + RS + IY+ + GG S+N
Sbjct: 68 --RSNAGQEDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSIN 122
>UniRef50_Q4FZ13 Cluster: Ribosomal RNA processing protein,
putative; n=2; Leishmania|Rep: Ribosomal RNA processing
protein, putative - Leishmania major
Length = 324
Score = 50.0 bits (114), Expect = 5e-05
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN 450
+R DGR ELR KL T DGS++ QG T V+ +++GP A + T V V
Sbjct: 6 VRRDGRTALELRGKEMKLSDMTTFDGSSWYAQGQTAVMVSIHGPTIAKNDEYDTCIVQVR 65
Query: 451 CQYS--MATFSTG-------ERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIY 603
Q++ +A + G ERK + + L L A E +PR + +
Sbjct: 66 IQHAGVLAPAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFLRERFPRCVLVVD 125
Query: 604 IXVLQADGGTYCASVN 651
+ V++ DG ++N
Sbjct: 126 VIVVRDDGSLPAVALN 141
>UniRef50_Q9RU11 Cluster: Ribonuclease PH; n=2; Deinococcus|Rep:
Ribonuclease PH - Deinococcus radiodurans
Length = 246
Score = 50.0 bits (114), Expect = 5e-05
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Frame = +1
Query: 280 DGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQY 459
+GR R + + GV GSA+L+ G T++LA V + + + + +Y
Sbjct: 10 EGRDALTPRPVSVQRGVNPHAPGSAHLKMGRTEILATVTLDDKPAPHMRGKKEGWLTAEY 69
Query: 460 SMATFSTGERKNRPRG--DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
SM ST +R+ R R + + E+ L +AL +++ + + + VL ADGGT
Sbjct: 70 SMLPRSTTDRQARERNLQNGRRHEIQRLLGRALRSSMDLRPFKNQTLYVDCDVLVADGGT 129
Query: 634 YCASV 648
ASV
Sbjct: 130 RVASV 134
>UniRef50_Q9VGZ2 Cluster: CG4043-PA; n=3; Sophophora|Rep: CG4043-PA
- Drosophila melanogaster (Fruit fly)
Length = 233
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/119 (25%), Positives = 56/119 (47%)
Frame = +1
Query: 295 NELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATF 474
++LR++ C+ ++ DGS QG T ++ AV GP + +S + + C Y
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYR---- 67
Query: 475 STGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
+ P+ + +E + +R L A+ +E +PRS + + I L+ G +VN
Sbjct: 68 ---PKAGLPQVTDRIREAA--IRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVN 121
>UniRef50_Q95Z09 Cluster: Rrp41p homologue; n=1; Trypanosoma
brucei|Rep: Rrp41p homologue - Trypanosoma brucei
Length = 256
Score = 48.8 bits (111), Expect = 1e-04
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKS--KMSTEAVVV 447
R DGR E+R + +Q DGSA+ QG T V A+ GP A + + T + V
Sbjct: 6 RRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCIHV 65
Query: 448 NCQYSM-ATFSTGE---RKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVL 615
N + TG + R R + E+ L + A + + +PR ++ ++ VL
Sbjct: 66 NRAARIPQEGGTGRLIMMERRERERCEDGELKQFLTSLVEAIVCLDRFPRCVLEAHVTVL 125
Query: 616 QADGGTYCASVN 651
DG + + N
Sbjct: 126 MDDGALFAVASN 137
>UniRef50_Q62HZ8 Cluster: Ribonuclease PH; n=443; Bacteria|Rep:
Ribonuclease PH - Burkholderia mallei (Pseudomonas
mallei)
Length = 243
Score = 48.4 bits (110), Expect = 1e-04
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTE 435
+++ LR GRR ++LR +R +G+ +E G+TKV+ + +
Sbjct: 1 MTNSSLRPSGRRADQLRDVRITRHYTKHAEGAVLVEFGDTKVICTASVAERVPEFLRERG 60
Query: 436 AVVVNCQYSMATFSTGERKNR--PRGDR--KSQEMSMHLRQALTAAIKTEMYPRSPIDIY 603
+ +Y M +T R +R RG + ++QE+ + +AL A + +
Sbjct: 61 QGWLTAEYGMLPRATHTRSDREAARGKQTGRTQEIQRLIGRALRAVFDLNALGPRTLHLD 120
Query: 604 IXVLQADGGTYCASV 648
V+QADGGT AS+
Sbjct: 121 CDVIQADGGTRTASI 135
>UniRef50_Q180F2 Cluster: HAM1 protein homolog; n=4;
Clostridiaceae|Rep: HAM1 protein homolog - Clostridium
difficile (strain 630)
Length = 449
Score = 48.0 bits (109), Expect = 2e-04
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Frame = +1
Query: 289 RPNE-LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSM 465
R NE +R ++ +GS +E G TKV+ + ++ +N +YSM
Sbjct: 7 RSNEQIRPVKITRDYTKYAEGSVLIEMGETKVICTASVEEKVPPFLRNSGTGWINAEYSM 66
Query: 466 ATFSTGERKNR--PRG--DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
+T +RK R RG D ++QE+ + +A+ + + I + V+QADGGT
Sbjct: 67 LPRATQQRKIRDASRGKIDGRTQEIQRLIGRAIRSVVDLNKLGERTIWVDCDVIQADGGT 126
Query: 634 YCASV 648
AS+
Sbjct: 127 RTASI 131
>UniRef50_Q8SQN4 Cluster: RIBONUCLEASE PH-LIKE PROTEIN; n=1;
Encephalitozoon cuniculi|Rep: RIBONUCLEASE PH-LIKE
PROTEIN - Encephalitozoon cuniculi
Length = 209
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/68 (39%), Positives = 35/68 (51%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMST 432
L+S +G R DGRRPNELRRI + G + QGNT+V GP + K +
Sbjct: 2 LVSEEGFREDGRRPNELRRIEATKRRIGE-KGRVDMRQGNTQVSVICSGPREIGKLSVGV 60
Query: 433 EAVVVNCQ 456
E V+ Q
Sbjct: 61 EFYAVSRQ 68
>UniRef50_Q5KWI5 Cluster: Ribonuclease PH; n=82; Bacteria|Rep:
Ribonuclease PH - Geobacillus kaustophilus
Length = 256
Score = 47.6 bits (108), Expect = 3e-04
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN 450
+R DGR ELR + +GS +E G+TKV+ + +
Sbjct: 1 MRADGRSSCELRPVHIHPHYMKHAEGSVLIEVGDTKVICTATVEEKVPSFMRGGGKGWIT 60
Query: 451 CQYSMATFSTGERKNRPRGDRKSQEMSMHLR----QALTAAIKTEMYPRSPIDIYIXVLQ 618
+Y M +T +R R K +M ++ +AL + + E I I V+Q
Sbjct: 61 AEYGMLPRATEQRNVREASKGKVSGRTMEIQRLIGRALRSVVDLEQLGERTIWIDCDVIQ 120
Query: 619 ADGGTYCASV 648
ADGGT AS+
Sbjct: 121 ADGGTRTASI 130
>UniRef50_Q9NQT4 Cluster: Exosome complex exonuclease RRP46; n=18;
Euteleostomi|Rep: Exosome complex exonuclease RRP46 -
Homo sapiens (Human)
Length = 235
Score = 46.8 bits (106), Expect = 5e-04
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Frame = +1
Query: 247 ADLLSSQGLRLDGRRPN-ELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSK 423
A + + G R P LR C+ + ++PDGSA QG+T VLA VYGP ++ K
Sbjct: 9 AKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGP---AEVK 65
Query: 424 MSTEAVVVNCQYSMATFSTGERK--NRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPID 597
+S E ++ AT R P KS+E +R A + ++PR+ I
Sbjct: 66 VSKEI------FNKATLEVILRPKIGLPGVAEKSRERL--IRNTCEAVVLGTLHPRTSIT 117
Query: 598 IYIXVLQADGGTYCASVN 651
+ + V+ G +N
Sbjct: 118 VVLQVVSDAGSLLACCLN 135
>UniRef50_Q8A4N6 Cluster: Polyribonucleotide nucleotidyltransferase;
n=5; Bacteroides|Rep: Polyribonucleotide
nucleotidyltransferase - Bacteroides thetaiotaomicron
Length = 708
Score = 46.4 bits (105), Expect = 6e-04
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASK---SKMST 432
+G RLDGR+ E+R I C++G P GSA +G T+ L +V G K + +
Sbjct: 316 EGKRLDGRKTTEIRPIWCEVGPLPGPHGSAIFTRGETQSLTSVTLGTKLDEKIIDNVLEH 375
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLR-QALTAAIKTEMYPRSPIDIYIX 609
Y+ FSTGE K + RG + + HL +AL I + YP + +
Sbjct: 376 GKERFLLHYNFPPFSTGEAKAQ-RGVGRREIGHGHLAWRALKGQIPAD-YP-YVVRVVSE 432
Query: 610 VLQADGGTYCASV 648
+L+++G + A+V
Sbjct: 433 ILESNGSSSMATV 445
>UniRef50_A7RZV7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 232
Score = 46.4 bits (105), Expect = 6e-04
Identities = 30/118 (25%), Positives = 54/118 (45%)
Frame = +1
Query: 298 ELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFS 477
ELR + C+ G+ + DGS+ QG+T+V+AA YGP + +K + + +
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKIGI 73
Query: 478 TGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
G + G +R + + T ++PR+ + I + V+Q G +VN
Sbjct: 74 PGCSEKLVEG---------IIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCAVN 122
>UniRef50_A6NT19 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 716
Score = 46.0 bits (104), Expect = 8e-04
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMST---- 432
QG R+DGR NE+R + ++GV + GS +G T+VL+ A+ K+ T
Sbjct: 319 QGHRVDGRAKNEIRPLSAEVGVLPKVHGSGLFTRGQTQVLSVATLNTLAASQKLDTIWEE 378
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAI-KTEMYPRSPIDIYIX 609
E Y+ +S GE K +R+ +AL + + +P + I +
Sbjct: 379 EEKRYMHHYNFPPYSVGEAKAPRSTNRREYGHGALAERALVPVLPSVDEFPYA-IRVVSE 437
Query: 610 VLQADGGTYCASV 648
VL ++G T S+
Sbjct: 438 VLSSNGSTSQGSI 450
>UniRef50_A4M9K5 Cluster: Polyribonucleotide nucleotidyltransferase;
n=2; Thermotogaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Petrotoga mobilis SJ95
Length = 695
Score = 46.0 bits (104), Expect = 8e-04
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVY--GP--HQASKS 420
++ ++ R+DGR +E+R I C++G+ + GSA +G T+ L V P Q +
Sbjct: 314 MIINENKRVDGRTCDEIRDITCEVGLIPRVHGSALFTRGETQSLGTVTLGAPLDVQVLDT 373
Query: 421 KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAI--KTEMYPRSPI 594
S E Y+ FSTGE K R RG + + HL + + E +P + I
Sbjct: 374 IFSDEEKRFMLHYNFPPFSTGEVK-RLRGVSRREIGHGHLAERAHKNLIPSDEEFPYT-I 431
Query: 595 DIYIXVLQADGGTYCASV 648
+ +L+++G + ASV
Sbjct: 432 RVVSDILESNGSSSMASV 449
>UniRef50_Q4T604 Cluster: Chromosome undetermined SCAF9013, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF9013,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 260
Score = 45.6 bits (103), Expect = 0.001
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 247 ADLLSSQGLRLDGRRPNE--LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK 417
AD G R DGR+ + +R + + G+ +Q GSAY+E G TK+L VYGP + +
Sbjct: 25 ADAAPPPGPRADGRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETER 83
>UniRef50_O83856 Cluster: Polyribonucleotide nucleotidyltransferase;
n=2; Treponema|Rep: Polyribonucleotide
nucleotidyltransferase - Treponema pallidum
Length = 702
Score = 45.6 bits (103), Expect = 0.001
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV----YGPHQASKSKMST 432
+GLR+DGR + +R I C++GV +P GSA +G T+ LA V Q
Sbjct: 311 RGLRIDGRAIDAIRPIACEVGVLPRPHGSAVFTRGETQSLAVVTLGAMSDGQVYDDIEGD 370
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
Y+ FS GE G R+ + R E +P + + + +
Sbjct: 371 RRENFILHYNFPPFSVGEIGRMGVGRREIGHGCLAHRSLSAVIPDPEQFPYT-VRVVSEI 429
Query: 613 LQADGGTYCASV 648
L+++G + A+V
Sbjct: 430 LESNGSSSMATV 441
>UniRef50_Q9ZAE1 Cluster: Polynucleotide phosphorylase; n=13;
Bacteria|Rep: Polynucleotide phosphorylase - Thermus
thermophilus
Length = 713
Score = 45.6 bits (103), Expect = 0.001
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV---YGPHQASKSK 423
L+ +G R DGR P +LR I ++ V + GSA +G T+VL V G +
Sbjct: 320 LVLEEGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTVTLGTGRDEQILDD 379
Query: 424 M---STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAI-KTEMYPRSP 591
+ TE +V+ Y+ FSTGE + R+ ++AL A + K E +P +
Sbjct: 380 LGIDETEKFLVH--YNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYT- 436
Query: 592 IDIYIXVLQADGGTYCASV 648
I + VL+++G + A+V
Sbjct: 437 IRVVGDVLESNGSSSMATV 455
>UniRef50_Q9S7G6 Cluster: Polynucleotide phosphorylase; n=5;
Magnoliophyta|Rep: Polynucleotide phosphorylase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 991
Score = 45.6 bits (103), Expect = 0.001
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVY--GPHQASK--SKMS 429
S G R+DGR +E+R I C+ GSA +G+T+VL V P +A S +
Sbjct: 360 SDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVG 419
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
YS + T E R +R+ +AL A + E I I
Sbjct: 420 PPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINSE 479
Query: 610 VLQADGGTYCASV 648
V+ +DG T ASV
Sbjct: 480 VMSSDGSTSMASV 492
>UniRef50_UPI0000498E66 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 227
Score = 45.2 bits (102), Expect = 0.001
Identities = 34/126 (26%), Positives = 59/126 (46%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR NE+R K+GV + GS +++ N+KV+++V + + E V
Sbjct: 7 RGDGREANEIRATTIKIGVISGAKGSCLIQKENSKVISSV--QIKTQDESIDFEFTV--- 61
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
+ + A F + N+ RK E+ L Q+L + I E I + + V++ DG
Sbjct: 62 KVTFAQFGNNDLLNK----RKEVELQEILTQSLVSRINQESNKGKIICLQVFVMEQDGSV 117
Query: 634 YCASVN 651
+ +N
Sbjct: 118 EDSIIN 123
>UniRef50_Q67P77 Cluster: Polynucleotide phosphorylase; n=17;
Bacteria|Rep: Polynucleotide phosphorylase -
Symbiobacterium thermophilum
Length = 762
Score = 44.4 bits (100), Expect = 0.002
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLA----AVYGPHQASKSKMST 432
+G+R DGR E+R I C + + +P GS ++G T+VL+ G Q
Sbjct: 326 EGIRPDGRSLTEIRPIECAVDLLPRPHGSGLFQRGQTQVLSICTLGTLGDMQKLDDLTLE 385
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
E Y+ +S GE + R+ +AL I E I + V
Sbjct: 386 ETKRFMHHYNFPPYSVGETRPLRGPGRREIGHGALAERALEPVIPPEEEFPYTIRVVSEV 445
Query: 613 LQADGGTYCASV 648
L+++G + ASV
Sbjct: 446 LESNGSSSMASV 457
>UniRef50_Q08VK2 Cluster: Ribonuclease PH; n=2; Proteobacteria|Rep:
Ribonuclease PH - Stigmatella aurantiaca DW4/3-1
Length = 276
Score = 44.4 bits (100), Expect = 0.002
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 298 ELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFS 477
+LR + GV +GSA +E G+T+V+ + M V +Y M S
Sbjct: 49 DLRPVTLTPGVSRHAEGSAQVEFGHTRVIVTCSVEERVPPHLMGKGTGWVTAEYGMLPRS 108
Query: 478 TGERKNRPRGDRKSQEMSMHLR----QALTAAIKTEMYPRSPIDIYIXVLQADGGTYCAS 645
T R R K +M ++ +++ AA+ + + V+QADGGT AS
Sbjct: 109 THTRSPREAAKGKQSGRTMEIQRLIGRSMRAAVNLSTLGPRTLTLDCDVIQADGGTRTAS 168
Query: 646 V 648
+
Sbjct: 169 I 169
>UniRef50_UPI0000519D97 Cluster: PREDICTED: similar to
polyribonucleotide nucleotidyltransferase 1; n=2;
Coelomata|Rep: PREDICTED: similar to polyribonucleotide
nucleotidyltransferase 1 - Apis mellifera
Length = 770
Score = 44.0 bits (99), Expect = 0.003
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN- 450
R DGR NELR I C++ +F GSA+ ++G T+VL V S K+ T +++ +
Sbjct: 354 RCDGRGMNELREISCQVDLFQPLHGSAFFQRGQTQVLCTVTLDSIESSLKLDTISMLSSG 413
Query: 451 -------CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
Y ++ E DR+ + L A I + YP + I +
Sbjct: 414 IKEKNFFLHYEFPPYAINETGKLTGIDRREIGHGALAEKGLQAVI-PQNYPFA-IRLTSE 471
Query: 610 VLQADGGTYCASV 648
VL+++G + AS+
Sbjct: 472 VLESNGSSSMASI 484
>UniRef50_Q83HF6 Cluster: Ribonuclease PH; n=3; Tropheryma
whipplei|Rep: Ribonuclease PH - Tropheryma whipplei
(strain TW08/27) (Whipple's bacillus)
Length = 247
Score = 43.6 bits (98), Expect = 0.004
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN 450
LR + R +E+R ++ G +GSA + GNT+VL + +
Sbjct: 11 LRKNSRAHDEIRPVKIIRGWNIYAEGSALIAFGNTRVLCNATFQRGVPPFLRGQRSGWIT 70
Query: 451 CQYSMATFSTGERKNRP--RG--DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQ 618
+Y+M S ER +R +G +S E+S + +++ A + + I + VLQ
Sbjct: 71 AEYAMLPRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQ 130
Query: 619 ADGGTYCASV 648
ADGGT A++
Sbjct: 131 ADGGTRTAAI 140
>UniRef50_Q3ZXV6 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Dehalococcoides|Rep: Polyribonucleotide
nucleotidyltransferase - Dehalococcoides sp. (strain
CBDB1)
Length = 720
Score = 42.3 bits (95), Expect = 0.010
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLA-AVYGPHQASK--SKMSTEAV 441
+R++GR +LR++ + G+ + GSA +G+T+V+A G Q S+ +S E
Sbjct: 311 IRVNGRGIKQLRQLDAETGLLPRVHGSALFTRGDTQVMAITTLGSLQESQQLDGLSAEDT 370
Query: 442 V-VNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKT-EMYPRSPIDIYIXVL 615
Y+ A FSTGE K R+ +AL + T E +P + I + V+
Sbjct: 371 KRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPYT-IRLVADVV 429
Query: 616 QADGGTYCASV 648
+ G T SV
Sbjct: 430 GSSGSTSMGSV 440
>UniRef50_A5GII1 Cluster: Ribonuclease PH; n=3; Synechococcus|Rep:
Ribonuclease PH - Synechococcus sp. (strain WH7803)
Length = 241
Score = 41.9 bits (94), Expect = 0.013
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR+ + LR + S + G T VL +V + + ++
Sbjct: 6 RKDGRQASALRPFAVEWDPMGFALSSVIVRTGRTAVLCSVCHEEGVPRWRRDQGLGWLSA 65
Query: 454 QYSMATFSTGERKNRP--RGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
+Y + ST ER+ R + ++QE+ + ++L AA+ E + + I V+QAD
Sbjct: 66 EYRLLPGSTPERQRREWLKLSGRTQEIQRLIGRSLRAALSMEALGENTLLIDCDVIQADA 125
Query: 628 GTYCASV 648
GT ASV
Sbjct: 126 GTRTASV 132
>UniRef50_O96177 Cluster: Putative uncharacterized protein PFB0415c;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFB0415c - Plasmodium falciparum
(isolate 3D7)
Length = 256
Score = 41.9 bits (94), Expect = 0.013
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK 417
R++ R+ NE+R + KLG S + GNTK+L VYGP+ SK
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSK 79
>UniRef50_A1RXQ5 Cluster: 3' exoribonuclease; n=1; Thermofilum
pendens Hrk 5|Rep: 3' exoribonuclease - Thermofilum
pendens (strain Hrk 5)
Length = 272
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/44 (43%), Positives = 31/44 (70%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
++G RLDGR+ ++ R IR + G+ + DGSA + G+T+V+A V
Sbjct: 21 AKGERLDGRKADQYREIRLEKGIIGKADGSARVFLGSTQVIAGV 64
>UniRef50_Q5CR63 Cluster: RPR46-like RNAse PH domain; n=2;
Cryptosporidium|Rep: RPR46-like RNAse PH domain -
Cryptosporidium parvum Iowa II
Length = 244
Score = 41.1 bits (92), Expect = 0.023
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVV 447
+R DGR E I +G+F +GSA G +KV+A V+ P +AS +K + V+
Sbjct: 8 IRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASSNKCKSYLEVI 66
>UniRef50_Q754G1 Cluster: AFR109Wp; n=1; Eremothecium gossypii|Rep:
AFR109Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 237
Score = 41.1 bits (92), Expect = 0.023
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +1
Query: 325 GVFTQPDGSAYLE----QGNTKVLAAVYGPHQASKSKMSTEAVVVNC-QYSMATFSTGER 489
G+ +GS+YLE NT ++ YGP S S A+ V+ + ++ + +GE
Sbjct: 49 GMIVNANGSSYLEVKAETHNTLLVTTAYGPRPIRGSFTSRAAISVHFKEVTLERWDSGE- 107
Query: 490 KNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQ 618
EM L +AAI E YP+S IDI++ ++Q
Sbjct: 108 ---------VTEMCNFLNTVFSAAINVERYPKSGIDIFLNLIQ 141
>UniRef50_Q6C6V0 Cluster: Yarrowia lipolytica chromosome E of strain
CLIB 122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome E of
strain CLIB 122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 262
Score = 41.1 bits (92), Expect = 0.023
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Frame = +1
Query: 298 ELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVV-VNCQYSMATF 474
++ I K GV +GSAYLE + K++A V+GP + + +T A++ V+ ++ +
Sbjct: 32 DIGSIFVKTGVVENANGSAYLELDDIKIVAIVHGP-RPMRGLFTTSAILNVDTKFLPVSL 90
Query: 475 STGERKN------------RPRGDRKS----QEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
E K+ R +S + +S ++ +L +I E YP+S ID+ I
Sbjct: 91 CDIESKSAVVSSTQLTQYIRSASTTQSSSLQKNVSSYVHTSLLPSILVEKYPKSTIDVSI 150
Query: 607 XVLQADGGT 633
VL + T
Sbjct: 151 SVLSSSNNT 159
>UniRef50_Q01CT7 Cluster: Exosomal 3'-5' exoribonuclease complex,
subunit Rrp41 and related exoribonucleases; n=2;
Ostreococcus|Rep: Exosomal 3'-5' exoribonuclease
complex, subunit Rrp41 and related exoribonucleases -
Ostreococcus tauri
Length = 378
Score = 40.3 bits (90), Expect = 0.039
Identities = 36/127 (28%), Positives = 57/127 (44%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN 450
LR DGR LRR R GSA T V+AAV+GP + + + + + V++
Sbjct: 128 LRPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVID 187
Query: 451 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGG 630
+ S + + R D+++ E LR A+ ++ +PR + I V+ DG
Sbjct: 188 VELSAPGWMS-------RDDQRACE--GRLRGAIERCVELRDFPRFGLRISARVVSDDGN 238
Query: 631 TYCASVN 651
A VN
Sbjct: 239 AEAACVN 245
>UniRef50_Q7MW79 Cluster: Polyribonucleotide nucleotidyltransferase;
n=22; cellular organisms|Rep: Polyribonucleotide
nucleotidyltransferase - Porphyromonas gingivalis
(Bacteroides gingivalis)
Length = 743
Score = 39.9 bits (89), Expect = 0.052
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASK---SKMST 432
+G RLDGR+ E+R I + P GSA +G T+ L V G K ++
Sbjct: 315 EGKRLDGRKTTEIRPIWIETDCLPGPHGSAIFTRGETQSLTTVTLGTKSDEKLVDDVLNY 374
Query: 433 EAVVVNCQYSMATFSTGE-RKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
Y+ FSTGE R R G R+ ++ +AL I T+ YP + +
Sbjct: 375 TKERFLLHYNFPPFSTGEARPQRGVGRREIGHGNL-AHRALKRMIPTD-YP-YVVRVISD 431
Query: 610 VLQADGGTYCASV 648
+L+++G + A+V
Sbjct: 432 ILESNGSSSMATV 444
>UniRef50_Q616U0 Cluster: Putative uncharacterized protein CBG15142;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG15142 - Caenorhabditis
briggsae
Length = 721
Score = 39.9 bits (89), Expect = 0.052
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
S G+R DGRRP + R IR ++ ++ + G + ++G T+V++ V
Sbjct: 309 STGIRCDGRRPTDFRPIRIQVDMYKKLHGCSMFQRGQTQVMSTV 352
>UniRef50_Q5KHX8 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 308
Score = 39.9 bits (89), Expect = 0.052
Identities = 32/119 (26%), Positives = 48/119 (40%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR P +LR + +G + DGSA G+ VLA+ GP + ++ E
Sbjct: 18 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEV---RLREELP---- 70
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGG 630
ATF R G S+ + L + E +PRS + + + L G
Sbjct: 71 --DKATFEVNHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSLVPSTG 127
>UniRef50_UPI0000E45B97 Cluster: PREDICTED: similar to Exosome
component 5, partial; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Exosome component
5, partial - Strongylocentrotus purpuratus
Length = 185
Score = 39.5 bits (88), Expect = 0.069
Identities = 24/94 (25%), Positives = 40/94 (42%)
Frame = +1
Query: 370 NTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQA 549
+T V+AAVYGP +K + V Y +G R+ + + +R
Sbjct: 1 DTSVMAAVYGPGDVKPNKALMDKATVTVTYKPKIGISGVRE---------KALERMIRNT 51
Query: 550 LTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
+ T ++PRS +DI + +Q G S+N
Sbjct: 52 CETVLLTTLFPRSSVDIIVQEIQDAGALLACSIN 85
>UniRef50_Q2QT85 Cluster: 3' exoribonuclease family, domain 1
containing protein, expressed; n=2; Oryza sativa
(japonica cultivar-group)|Rep: 3' exoribonuclease
family, domain 1 containing protein, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 284
Score = 39.1 bits (87), Expect = 0.091
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+Q LR DGRR + R I + GV Q +GSA + G T+V+A V
Sbjct: 17 AQDLRTDGRRRLQFRAISVETGVIPQANGSARVRLGATEVIATV 60
>UniRef50_A3H8A6 Cluster: 3' exoribonuclease; n=1; Caldivirga
maquilingensis IC-167|Rep: 3' exoribonuclease -
Caldivirga maquilingensis IC-167
Length = 279
Score = 39.1 bits (87), Expect = 0.091
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
L S+G R D R+ +R + ++GV DGSA + GNTKV+A +
Sbjct: 20 LISEGKRPDDRQLISMRDLTIRVGVIKTADGSALVNLGNTKVIAGI 65
>UniRef50_A7RP27 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 710
Score = 38.7 bits (86), Expect = 0.12
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLA-AVYGP-HQASKSKMSTEAV-- 441
R DGR+ +ELR I C + ++ GS+ ++G T+V + A +G A+K +EAV
Sbjct: 305 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQVFSTATFGSVGSAAKVDTISEAVGG 364
Query: 442 ----VVNCQYSMATFSTGERKNRPRG--DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIY 603
Y FST E K R RG DR+ +AL + E+ P + + +
Sbjct: 365 SKEKQFMLHYEFPPFSTNEVKQR-RGSFDRREIGHGALAERALVPVLPDEL-PFT-LRLT 421
Query: 604 IXVLQADGGTYCAS 645
VL ++G + AS
Sbjct: 422 AEVLGSNGSSSLAS 435
>UniRef50_UPI0000D55D29 Cluster: PREDICTED: similar to Exosome
complex exonuclease RRP45 (Exosome component 9)
(Polymyositis/scleroderma autoantigen 1) (Autoantigen
PM/Scl 1) (Polymyositis/scleroderma autoantigen 75 kDa)
(PM/Scl-75) (P75 polymyositis-scleroderma overlap
syndrome associated a...; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Exosome complex exonuclease RRP45
(Exosome component 9) (Polymyositis/scleroderma
autoantigen 1) (Autoantigen PM/Scl 1)
(Polymyositis/scleroderma autoantigen 75 kDa)
(PM/Scl-75) (P75 polymyositis-scleroderma overlap
syndrome associated a... - Tribolium castaneum
Length = 389
Score = 38.3 bits (85), Expect = 0.16
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAV 441
S+ RLDGR +E R + K G + GS Y+ GNTKVLA Q KS +E +
Sbjct: 22 SEWRRLDGRSFDEFRPLELKFG---KQWGSCYVSLGNTKVLAQTSCEIQQPKSSRPSEGI 78
Query: 442 V 444
+
Sbjct: 79 L 79
>UniRef50_O51745 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Borrelia burgdorferi group|Rep: Polyribonucleotide
nucleotidyltransferase - Borrelia burgdorferi (Lyme
disease spirochete)
Length = 722
Score = 38.3 bits (85), Expect = 0.16
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKM----S 429
+ +R DGR PNE+R I ++ + ++ GSA +G T+ LA + M
Sbjct: 312 NDNIRTDGRTPNEIRDIISEVDILSRTHGSALFTRGETQALAVTTLGTSIDEQIMDDIDG 371
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQ-ALTAAIKTEMYPRSPIDIYI 606
+ + Y+ FS GE G R+ HL Q AL + + + I +
Sbjct: 372 DKRLNFMLHYNFPPFSVGETGRLMTGRREIGH--GHLAQRALESMVPGKNDFPYTIRVVS 429
Query: 607 XVLQADGGTYCASV 648
VL+++G + A+V
Sbjct: 430 EVLESNGSSSMATV 443
>UniRef50_A4RTW2 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 823
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVL-AAVYGPHQASKSKM 426
D++ ++G R DGR + +R I C+ G+ + GS+ +G T+ + A G Q ++ +
Sbjct: 370 DVIRTKGRRQDGRTTSMIRPIACEAGILPRTHGSSLFTRGETQAIGVATLGGSQDAQRQD 429
Query: 427 STEA 438
EA
Sbjct: 430 DVEA 433
>UniRef50_Q8ZVN0 Cluster: Probable exosome complex exonuclease 2;
n=4; Pyrobaculum|Rep: Probable exosome complex
exonuclease 2 - Pyrobaculum aerophilum
Length = 274
Score = 38.3 bits (85), Expect = 0.16
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASKSKMSTEAVVVN 450
R+DGR P + R + +GV DGSA ++ G T V+A V G Q +VVN
Sbjct: 29 RVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDAPDEGVLVVN 88
Query: 451 CQ 456
+
Sbjct: 89 AE 90
>UniRef50_Q4SQL7 Cluster: Chromosome 17 SCAF14532, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 17 SCAF14532, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 37.9 bits (84), Expect = 0.21
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+L+ ++ R DGR LR I C++ +F GSA ++G T+VL++V
Sbjct: 297 NLVLNEYRRCDGRELTALRNISCEVDLFKPLHGSALFQRGQTQVLSSV 344
>UniRef50_Q74CS9 Cluster: Polyribonucleotide nucleotidyltransferase;
n=28; Proteobacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Geobacter sulfurreducens
Length = 697
Score = 37.9 bits (84), Expect = 0.21
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVL-AAVYG---PHQASKSKMSTE 435
G R+DGR +R I ++ + + GSA +G T+ L A+ G Q S
Sbjct: 311 GYRIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGET 370
Query: 436 AVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAI-KTEMYPRSPIDIYIXV 612
Y+ FS GE R R+ M +AL + K E +P + I I +
Sbjct: 371 RKRFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYT-IRIVSDI 429
Query: 613 LQADGGTYCASV 648
L+++G + A+V
Sbjct: 430 LESNGSSSMATV 441
>UniRef50_Q2S1P1 Cluster: Polyribonucleotide nucleotidyltransferase;
n=1; Salinibacter ruber DSM 13855|Rep:
Polyribonucleotide nucleotidyltransferase - Salinibacter
ruber (strain DSM 13855)
Length = 722
Score = 37.9 bits (84), Expect = 0.21
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPH---QASK 417
+++ +G R+DGR ++R + ++G + GSA +G T+VL ++ G Q
Sbjct: 324 NMIVEEGKRIDGRDQTDVRDLWMEVGYLPRVHGSAIFTRGETQVLGSITLGTSDDVQPVD 383
Query: 418 SKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAI-KTEMYPRSPI 594
+ Y FS GE R+ SM +AL I + + +P + I
Sbjct: 384 EVFADTDKSFYLHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRPVIPEQDEFPYT-I 442
Query: 595 DIYIXVLQADGGTYCASV 648
I V++++G + ASV
Sbjct: 443 RINADVMESNGSSSMASV 460
>UniRef50_A4RT74 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 679
Score = 37.9 bits (84), Expect = 0.21
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASK---SKMST 432
+G+R+DGR ELR + G GSA E+GNT+ LA V G + S+ +
Sbjct: 264 EGVRVDGRGVYELRNLDGVTGTMPIVHGSALFERGNTQALATVTLGSLEDSQRLDNLTGP 323
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
+ + YS +FS E R R+ ++ + L + +P + + +
Sbjct: 324 TSKRLMLHYSFPSFSVNETGARGLSRREVGHGALAEKSLLGVFPDEDAFPFA-VRVNTET 382
Query: 613 LQADGGTYCASV 648
L+++G + A+V
Sbjct: 383 LESNGSSSMAAV 394
>UniRef50_A2FL81 Cluster: 3' exoribonuclease family, domain 1
containing protein; n=1; Trichomonas vaginalis G3|Rep:
3' exoribonuclease family, domain 1 containing protein -
Trichomonas vaginalis G3
Length = 203
Score = 37.9 bits (84), Expect = 0.21
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 307 RIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAV-VVNCQYSMATFSTG 483
+I +LG GSAY+E +TKV AAVYGP + + + +V+C A +T
Sbjct: 4 KIGVRLGDIKGAAGSAYVELNDTKVFAAVYGPMEPENQQQDSALTGIVDCIIEDAWQNTK 63
Query: 484 E 486
E
Sbjct: 64 E 64
>UniRef50_Q6CJI8 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome F of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 236
Score = 37.9 bits (84), Expect = 0.21
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Frame = +1
Query: 334 TQPDGSAYLE-----QGNTKVLAAVYGPHQASKSKMSTEAVVVNC-QYSMATFSTGERKN 495
T +GS+YLE V+++V+GP S S +V + + ++ +TGE K
Sbjct: 53 TNANGSSYLEYMDGTSDQVLVMSSVFGPRPLRGSFQSKASVSIQFKEVTLEHLNTGEIK- 111
Query: 496 RPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQ 618
E+ L A I E YP+S IDI+I ++Q
Sbjct: 112 ---------EICTFLTNVFNAVINVEKYPKSGIDIFIDLIQ 143
>UniRef50_Q59LU3 Cluster: Potential exosome component Mtr3p; n=3;
Saccharomycetales|Rep: Potential exosome component Mtr3p
- Candida albicans (Yeast)
Length = 293
Score = 37.5 bits (83), Expect = 0.28
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Frame = +1
Query: 319 KLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQY------SMAT--- 471
K + +GSAYLE NT + +++GP S + +V V+C++ M +
Sbjct: 44 KHSIIDNANGSAYLEINNTIIEVSIFGPRPIRGSFIDRASVSVDCKFLPHIIQPMGSIFN 103
Query: 472 ------------FSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVL 615
S+ R R + ++S +L + +++ E YP+S IDI + ++
Sbjct: 104 DTTTSGVGGGGGISSSNRGYRTGMNNIEHKLSSYLETCVLSSLILEKYPKSTIDIQVSII 163
Query: 616 QAD 624
D
Sbjct: 164 SID 166
>UniRef50_A6DU91 Cluster: Polynucleotide
phosphorylase/polyadenylase; n=1; Lentisphaera araneosa
HTCC2155|Rep: Polynucleotide phosphorylase/polyadenylase
- Lentisphaera araneosa HTCC2155
Length = 696
Score = 37.1 bits (82), Expect = 0.37
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASKSKMS 429
L+ +G R DGR +LR + + + + GSA +G T+ L V G +A++S +
Sbjct: 308 LIIEEGKRADGRGAEDLRPLSAENSLMPRTHGSALFARGETQALVTVTLGDAKAAQSAET 367
Query: 430 TEA---VVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDI 600
Y+ FS GE R G + +L + A + YP + + +
Sbjct: 368 IRGRYDKTFYLHYNFPNFSVGE-CGRIMGAGNREIGHGNLAERALAKMMPADYPYT-VRV 425
Query: 601 YIXVLQADGGTYCASV 648
V+ ++G T AS+
Sbjct: 426 ISEVMGSNGSTSMASI 441
>UniRef50_Q965N3 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 745
Score = 37.1 bits (82), Expect = 0.37
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
G+R DGRRP+E R I + ++ + G + ++G T+V++ V
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTV 373
>UniRef50_O26778 Cluster: Probable exosome complex exonuclease 2;
n=2; Methanobacteriaceae|Rep: Probable exosome complex
exonuclease 2 - Methanobacterium thermoautotrophicum
Length = 271
Score = 37.1 bits (82), Expect = 0.37
Identities = 17/48 (35%), Positives = 33/48 (68%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
DL++++ R+DGR +E R I + GV ++ +GS+ ++ GNT+++ V
Sbjct: 18 DLINNKE-RIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV 64
>UniRef50_A0LE14 Cluster: Polyribonucleotide nucleotidyltransferase;
n=10; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Magnetococcus sp. (strain MC-1)
Length = 701
Score = 36.7 bits (81), Expect = 0.49
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVV 444
QG R+DGR ++R I C++ + + G+A +G T+ +A V + + T +
Sbjct: 315 QGKRVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATVTLGTSRDEQIVETLSGE 374
Query: 445 VN----CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAI-KTEMYPRSPIDIYIX 609
Y+ + GE R+ +ALTA + E++P + + I
Sbjct: 375 YRDRFYLNYTFPPYCVGETGRMGAPGRREIGHGKLATRALTAIVPSAEVFPYT-LRITSE 433
Query: 610 VLQADGGTYCASV 648
+ +++G + A+V
Sbjct: 434 ITESNGSSSMATV 446
>UniRef50_Q9SSE1 Cluster: MLP3.20 protein; n=5; core
eudicotyledons|Rep: MLP3.20 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 297
Score = 36.7 bits (81), Expect = 0.49
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV---YGPHQASKSKMST 432
+Q LR DGR+ R I + GV Q +GSA + G T V+A+V G + +
Sbjct: 16 AQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGK 75
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQAL 552
AV ++C A + G R G+ S E+++ L++ L
Sbjct: 76 VAVFIDCS-PTAEPTFGGR----GGEELSSELALALQRCL 110
>UniRef50_Q7UR95 Cluster: Polyribonucleotide nucleotidyltransferase;
n=3; Planctomycetaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Rhodopirellula baltica
Length = 818
Score = 36.3 bits (80), Expect = 0.64
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV----YGPHQASKSKMSTE 435
G R DGR N LR I C+ + + GSA ++G T+ L + Q
Sbjct: 379 GTRPDGRDHNSLRAIHCETDLLPRVHGSALFQRGETQALITIALGTSRDEQRVDGLQDEY 438
Query: 436 AVVVNCQYSMATFSTGE-RKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
+ Y+ ++S GE R R G R+ + R + +P + I + +
Sbjct: 439 SKKFMLDYNFPSYSVGECRPIRGPGRREIGHGCLAERSVAPVLPSADDFPYT-IRVISDI 497
Query: 613 LQADGGTYCASV 648
+++G + ASV
Sbjct: 498 TESNGSSSMASV 509
>UniRef50_Q5DA97 Cluster: SJCHGC04772 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC04772 protein - Schistosoma
japonicum (Blood fluke)
Length = 277
Score = 36.3 bits (80), Expect = 0.64
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASKSKMSTEAVV 444
G R+DGR P+E R + + + + GSA + G T ++ V + S ++++ +
Sbjct: 21 GCRMDGRGPSEYRPLEIETNILSHATGSASIRIGETFIVCCVKMEVGKPSLTRLNEGRIE 80
Query: 445 VNCQ-YSMATFSTGER 489
+N + Y AT+ E+
Sbjct: 81 INVECYPTATYRCNEK 96
>UniRef50_Q6L224 Cluster: Ribonuclease PH; n=2;
Thermoplasmatales|Rep: Ribonuclease PH - Picrophilus
torridus
Length = 260
Score = 36.3 bits (80), Expect = 0.64
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+G RLDGR N+ R I+ + GSA +E G TKV+A V
Sbjct: 23 RGKRLDGRGLNDFRDIKIFENYIPKASGSAMVELGRTKVVAGV 65
>UniRef50_Q5HPR7 Cluster: Polyribonucleotide nucleotidyltransferase;
n=17; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Staphylococcus epidermidis
(strain ATCC 35984 / RP62A)
Length = 701
Score = 36.3 bits (80), Expect = 0.64
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV----YGPHQASKS 420
L++ + +R DGR+ +E+R + ++G+ + GS +G T+ L+ + G +Q
Sbjct: 312 LIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDG 371
Query: 421 KMSTEAVVVNCQYSMATFSTGER-KNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPID 597
Y+ FS GE R G R+ ++ R T+ +P + I
Sbjct: 372 LGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIPDTQDFPYT-IR 430
Query: 598 IYIXVLQADGGTYCASV 648
I VL+++G + AS+
Sbjct: 431 IVSEVLESNGSSSQASI 447
>UniRef50_UPI0000498B14 Cluster: exosome complex exonuclease; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease - Entamoeba histolytica HM-1:IMSS
Length = 265
Score = 35.9 bits (79), Expect = 0.85
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+R DGR + R I+C+ GV Q +GS L G T+V+ V
Sbjct: 20 IRTDGRANIQFREIKCEKGVIDQANGSVRLCLGKTEVVVGV 60
>UniRef50_Q92HV7 Cluster: Polyribonucleotide nucleotidyltransferase;
n=20; Proteobacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Rickettsia conorii
Length = 749
Score = 35.9 bits (79), Expect = 0.85
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAA 390
R+DGR ++R+I C++G+ GSA +G T+ L +
Sbjct: 316 RIDGRSTTDIRQIACEIGLLPSAHGSALFTRGETQSLVS 354
>UniRef50_Q8KBY3 Cluster: Polyribonucleotide nucleotidyltransferase;
n=10; Chlorobiaceae|Rep: Polyribonucleotide
nucleotidyltransferase - Chlorobium tepidum
Length = 733
Score = 35.5 bits (78), Expect = 1.1
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 4/136 (2%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASKS--- 420
++ G RLDGR ++R I +LG+ + GSA +G T+ L + G + ++S
Sbjct: 325 MILDDGKRLDGRTLEQVRPISIELGLIPRAHGSALFTRGETQALVTLTLGTKKDAQSVDT 384
Query: 421 KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDI 600
+ Y+ FS GE R+ +A+ + +E + +
Sbjct: 385 LTDDKDKRFMLHYNFPPFSVGEIGRVGGAGRREIGHGNLAERAIKMVMPSEQEFPYTVRL 444
Query: 601 YIXVLQADGGTYCASV 648
+L+++G + ASV
Sbjct: 445 VSDILESNGSSSMASV 460
>UniRef50_Q01D77 Cluster: Putative polynucleotide phosphorylase;
n=1; Ostreococcus tauri|Rep: Putative polynucleotide
phosphorylase - Ostreococcus tauri
Length = 615
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVL-AAVYGPHQ 408
D + ++G R DGR +R I C+ G+ + GSA +G T+ + A G +Q
Sbjct: 420 DTIRTKGRRQDGRTTRMVRPIACEAGLLPRTHGSALFTRGETQAIGVATLGGNQ 473
>UniRef50_Q49X62 Cluster: Polyribonucleotide nucleotidyltransferase;
n=41; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 /DSM 20229)
Length = 697
Score = 35.5 bits (78), Expect = 1.1
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
L++ + +R DGR+ +E+R + ++GV + GS +G T+ L+ +
Sbjct: 312 LIAEEKIRPDGRKTDEIRPLESEVGVLPRAHGSGLFTRGQTQALSVL 358
>UniRef50_Q9HV59 Cluster: Polyribonucleotide nucleotidyltransferase;
n=48; Proteobacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Pseudomonas aeruginosa
Length = 701
Score = 35.5 bits (78), Expect = 1.1
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVL-AAVYGPHQASKSKMSTEAV--- 441
R+DGR +R +R ++GV + GSA +G T+ L A G + ++ + E
Sbjct: 316 RIDGRDTRTVRPLRIEVGVLGKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKD 375
Query: 442 VVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQA 621
Y+ FS GE R+ R+ + A + T+ I + + ++
Sbjct: 376 AFMLHYNFPPFSVGECGRMGSPGRREIGHGRLARRGVAAMLPTQDEFPYTIRVVSEITES 435
Query: 622 DGGTYCASV 648
+G + ASV
Sbjct: 436 NGSSSMASV 444
>UniRef50_Q8TCS8 Cluster: Polyribonucleotide nucleotidyltransferase
1, mitochondrial precursor; n=44; Coelomata|Rep:
Polyribonucleotide nucleotidyltransferase 1,
mitochondrial precursor - Homo sapiens (Human)
Length = 783
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
R DGR LR + C++ +F GSA ++G T+VL V
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTV 397
>UniRef50_Q9ZUI4 Cluster: T2K10.14 protein; n=10; Magnoliophyta|Rep:
T2K10.14 protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 302
Score = 35.1 bits (77), Expect = 1.5
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
S+ LR DGR+ + R LG+ + DGSA + G+T +LAA+
Sbjct: 33 SESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAI 76
>UniRef50_Q8GZQ3 Cluster: Polynucleotide phosphorylase; n=10;
cellular organisms|Rep: Polynucleotide phosphorylase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 922
Score = 35.1 bits (77), Expect = 1.5
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASKS----KMST 432
G R DGR +E+R I + G+ + GS +G T+ LA V G Q ++ + S
Sbjct: 445 GKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSD 504
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
E QY+ S GE R+ +AL + ++ I + V
Sbjct: 505 EYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTV 564
Query: 613 LQADGGTYCASV 648
++++G + ASV
Sbjct: 565 IESNGSSSMASV 576
>UniRef50_A7CVE2 Cluster: Polyribonucleotide nucleotidyltransferase;
n=1; Opitutaceae bacterium TAV2|Rep: Polyribonucleotide
nucleotidyltransferase - Opitutaceae bacterium TAV2
Length = 747
Score = 34.7 bits (76), Expect = 2.0
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 7/135 (5%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVL-AAVYGPHQASKSKMSTEAV 441
+GLR D R +R + ++G + GSA ++G+T+ L A GP + ++
Sbjct: 313 RGLRADKRDAKTIRPLASEVGTLPRVHGSALFQRGDTQTLVTATLGPTKEAQDMDGLTGG 372
Query: 442 VVN----CQYSMATFSTGE--RKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIY 603
+ Y+ +S GE R P G R+ ++ R + +++P + I +
Sbjct: 373 ATSKSFILHYNFPPYSVGETGRFGNP-GRREIGHGALAERSLVPVLPPEDVFPYT-IRLV 430
Query: 604 IXVLQADGGTYCASV 648
++ ++G T AS+
Sbjct: 431 SDIMASNGSTSMASI 445
>UniRef50_Q98S59 Cluster: Putative uncharacterized protein orf209;
n=1; Guillardia theta|Rep: Putative uncharacterized
protein orf209 - Guillardia theta (Cryptomonas phi)
Length = 209
Score = 34.7 bits (76), Expect = 2.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASK 417
+RLDGR NE+R I+ K +F S + G TK+L+ + H K
Sbjct: 4 IRLDGRACNEIRPIKIKSNIFKNYAFSTEISIGATKILSYMIENHNYEK 52
>UniRef50_Q96B26 Cluster: Exosome complex exonuclease RRP43; n=37;
Eumetazoa|Rep: Exosome complex exonuclease RRP43 - Homo
sapiens (Human)
Length = 276
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVV 444
+ R DGR E R +G + DGSA ++ GNT V+ V A + + V
Sbjct: 20 ENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKGYV 79
Query: 445 V 447
V
Sbjct: 80 V 80
>UniRef50_Q8T4A9 Cluster: AT07738p; n=2; Sophophora|Rep: AT07738p -
Drosophila melanogaster (Fruit fly)
Length = 412
Score = 34.3 bits (75), Expect = 2.6
Identities = 21/47 (44%), Positives = 25/47 (53%)
Frame = +1
Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
L Q RLDGRR NE R + G + GS + G+TKVLA V
Sbjct: 22 LAVKQNQRLDGRRSNESRDVELTFG---KDWGSVAVSMGDTKVLAQV 65
>UniRef50_Q4YZG1 Cluster: Putative uncharacterized protein; n=9;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium berghei
Length = 1081
Score = 34.3 bits (75), Expect = 2.6
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -3
Query: 234 LTSNKNTLKNNELFNMLNCFVKNICFLLCYIIIVDSVF--KIRGDSNNS*ELVMDVMVIK 61
LT N LK N L N K IC ++CY I + + KI N EL M+ + I
Sbjct: 310 LTIITNILKKNALENYKYIMKKRICNVICYFFIYNYPYLCKIFQGDKNFEELYMNFIRIL 369
Query: 60 E*RLINILFSFNYFLNVYF 4
+ I +NY + +YF
Sbjct: 370 YIDINIIKTYYNYKIFIYF 388
>UniRef50_Q2NEX4 Cluster: Putative exosome complex, exonuclease 2
subunit; n=1; Methanosphaera stadtmanae DSM 3091|Rep:
Putative exosome complex, exonuclease 2 subunit -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 265
Score = 34.3 bits (75), Expect = 2.6
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
DLL+ QG R+D R+ +E R I K + DGSA + G T V+ V
Sbjct: 15 DLLN-QGKRIDDRKFSEYRNISIKTNYIGKADGSAMVSIGCTTVIVGV 61
>UniRef50_A6DA62 Cluster: Polynucleotide
phosphorylase/polyadenylase; n=1; Caminibacter
mediatlanticus TB-2|Rep: Polynucleotide
phosphorylase/polyadenylase - Caminibacter
mediatlanticus TB-2
Length = 725
Score = 33.9 bits (74), Expect = 3.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLA 387
+G+R DGR+ +E+R I + V + GS +G T+ LA
Sbjct: 339 EGIRADGRKLDEIRPISIETNVLPRAHGSCLFTRGQTQALA 379
>UniRef50_Q7Q0D9 Cluster: ENSANGP00000011759; n=2; Culicidae|Rep:
ENSANGP00000011759 - Anopheles gambiae str. PEST
Length = 274
Score = 33.9 bits (74), Expect = 3.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 271 LRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+R DGR ELR + V DGSA ++ GNT V+ +
Sbjct: 23 IRPDGRELEELRPLAISFDVIKSADGSAIVKVGNTTVVCGI 63
>UniRef50_Q8TGX5 Cluster: Probable exosome complex exonuclease 2;
n=9; Archaea|Rep: Probable exosome complex exonuclease 2
- Methanosarcina acetivorans
Length = 266
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
L +G R DGR + R ++ + V + +GSA + GNT+VL V
Sbjct: 19 LMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGV 64
>UniRef50_Q7NW41 Cluster: Putative uncharacterized protein; n=1;
Chromobacterium violaceum|Rep: Putative uncharacterized
protein - Chromobacterium violaceum
Length = 321
Score = 33.5 bits (73), Expect = 4.5
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +1
Query: 325 GVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPR 504
GVFT A L T VL Y +QASK S E ++ NC++ T+S G + P+
Sbjct: 199 GVFTASI-MAGLAIATTIVLG--YWSYQASKRASSAEMLIRNCEFHGKTYSIGSIIDNPQ 255
Query: 505 GD 510
D
Sbjct: 256 AD 257
>UniRef50_O59222 Cluster: Putative uncharacterized protein PH1550;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1550 - Pyrococcus horikoshii
Length = 111
Score = 33.5 bits (73), Expect = 4.5
Identities = 26/63 (41%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 494 FFRSPVENVAILYWQLTTTASVDIFDFEA*-WGPYTAASTFVFPCSRYALPSGWVNTPSL 318
FF S AILY L S FE GPYTAA P S YA P + TP+
Sbjct: 9 FFLSSTLKGAILYLTLRIALSGLCKCFECNSLGPYTAAIILFLPHSIYAEPFAFFKTPTF 68
Query: 317 HLI 309
LI
Sbjct: 69 ILI 71
>UniRef50_A7DRS4 Cluster: 3' exoribonuclease; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: 3' exoribonuclease -
Candidatus Nitrosopumilus maritimus SCM1
Length = 272
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
L QG R+DGR +E R + + + +GSA + G+T+V+ V
Sbjct: 18 LLEQGKRVDGRALDESREVSIETNAIPKANGSARVRLGDTEVVCGV 63
>UniRef50_A0RXU0 Cluster: RNase PH-related exoribonuclease; n=1;
Cenarchaeum symbiosum|Rep: RNase PH-related
exoribonuclease - Cenarchaeum symbiosum
Length = 270
Score = 33.5 bits (73), Expect = 4.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
L +G R+DGRR +E R++ + + +GSA + G T V+ V
Sbjct: 18 LLERGERIDGRRLDEPRKLTIETNAIPKAEGSARVHLGRTDVVTGV 63
>UniRef50_Q9UXC0 Cluster: Probable exosome complex exonuclease 2;
n=5; Sulfolobaceae|Rep: Probable exosome complex
exonuclease 2 - Sulfolobus solfataricus
Length = 275
Score = 33.5 bits (73), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 256 LSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLA 387
L +G+R DGR+ + R + L + DGSA ++ G T VLA
Sbjct: 22 LFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLA 65
>UniRef50_Q8U0M0 Cluster: Probable exosome complex exonuclease 2;
n=8; Euryarchaeota|Rep: Probable exosome complex
exonuclease 2 - Pyrococcus furiosus
Length = 277
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
R+D R + R I ++GV + +GSA ++ GNT+VL +
Sbjct: 24 RIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGI 63
>UniRef50_A4EC74 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 748
Score = 33.1 bits (72), Expect = 6.0
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLA----AVYGPHQASKSKMSTE 435
G R+DGR +E+R I K GS ++G T+VL+ + Q + TE
Sbjct: 317 GERVDGRAADEIRPIMVKDNYLPLVHGSGLFQRGQTQVLSVLSLGMLNEGQRLDTIEPTE 376
Query: 436 AVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVL 615
Y+ F TGE R+ +AL + E I + V+
Sbjct: 377 GKRYMHHYNFPPFCTGETGRMGSPKRREIGHGNLAERALLPVLPDENEFPYAIRVVSEVM 436
Query: 616 QADGGTYCAS 645
+++G + AS
Sbjct: 437 ESNGSSSMAS 446
>UniRef50_Q54CU6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 293
Score = 33.1 bits (72), Expect = 6.0
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+ +R DGR +++R+ G T DGS++++ G+T V+ V
Sbjct: 19 RSVRPDGRSLDDIRKTTISTGSITTADGSSFVKIGSTSVVCGV 61
>UniRef50_P87319 Cluster: Vacuolar protein sorting-associated protein
13a; n=2; Schizosaccharomyces pombe|Rep: Vacuolar protein
sorting-associated protein 13a - Schizosaccharomyces
pombe (Fission yeast)
Length = 3011
Score = 33.1 bits (72), Expect = 6.0
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 415 KSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLR-QALTAAIKTEMYPRSP 591
K + + +V CQ+S TFST + + KSQ +S H +T + E+ P
Sbjct: 1990 KDLVDNKQSLVTCQHSDNTFSTPACRFAANAELKSQTISNHYPFMHITISALLEVKNLLP 2049
Query: 592 IDIYIXVLQAD 624
ID+ I ++ D
Sbjct: 2050 IDLNIRIIDKD 2060
>UniRef50_UPI0000499D67 Cluster: exosome complex exonuclease 1; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: exosome complex
exonuclease 1 - Entamoeba histolytica HM-1:IMSS
Length = 223
Score = 32.7 bits (71), Expect = 7.9
Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Frame = +1
Query: 298 ELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQ-YSMATF 474
++R I V ++ DG +QG + V++ V P K + + + +V + Y +
Sbjct: 13 KIRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRAIVKVEVYERCSS 72
Query: 475 STGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
+R+ E+ ++ + + +E YP I++ +++ DG ++N
Sbjct: 73 FDNQRRT---------ELEEFIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVTMN 122
>UniRef50_Q127W8 Cluster: Polyribonucleotide nucleotidyltransferase;
n=19; Bacteria|Rep: Polyribonucleotide
nucleotidyltransferase - Polaromonas sp. (strain JS666 /
ATCC BAA-500)
Length = 707
Score = 32.7 bits (71), Expect = 7.9
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVN- 450
R+DGR +R I + V + GSA +G T+ L + ++ +
Sbjct: 317 RIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVTTLGTERDAQRIDALSGDYED 376
Query: 451 ---CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKT-EMYPRSPIDIYIXVLQ 618
Y+M F+TGE R+ ++AL A + T E +P + + + + +
Sbjct: 377 RFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALIAVLPTKEEFPYT-MRVVSEITE 435
Query: 619 ADGGTYCASV 648
++G + ASV
Sbjct: 436 SNGSSSMASV 445
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,963,752
Number of Sequences: 1657284
Number of extensions: 11449898
Number of successful extensions: 27437
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 26528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27351
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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