Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D14
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 113 2e-26
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 67 2e-12
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 34 0.021
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 33 0.036
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 28 1.4
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 27 2.4
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 26 4.1
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 7.2
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 9.5
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 113 bits (273), Expect = 2e-26
Identities = 56/135 (41%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ-ASKSKM 426
++LS +GLR DGRR +E+R +C++G+ +GSA++E GNTKVL V GP + KSK
Sbjct: 5 EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKA 64
Query: 427 STEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYI 606
+ VN + ++A+FST + K R + DR+ Q + L+ I+TE+YPRS I +Y+
Sbjct: 65 RADRTFVNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYL 124
Query: 607 XVLQADGGTYCASVN 651
VLQ DG + +N
Sbjct: 125 HVLQDDGAVMASCIN 139
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/114 (31%), Positives = 63/114 (55%)
Frame = +1
Query: 286 RRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSM 465
R + R+I KLG T+ GS+Y E K+ V GP + SK+ + +NC++ +
Sbjct: 30 RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGP-RPSKTFAFRSSAKLNCEFRL 88
Query: 466 ATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
+ FST R+ + + + S + A++ +I +YP+S ID+YI V+++DG
Sbjct: 89 SPFSTSVRQGHVQ-TVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDG 141
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 33.9 bits (74), Expect = 0.021
Identities = 27/110 (24%), Positives = 51/110 (46%)
Frame = +1
Query: 319 KLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNR 498
++G+ ++ DGS+ +QG+ +V+ V GP K+ E + + AT +
Sbjct: 3 RIGILSRSDGSSEWKQGSARVICGVNGPIDV---KIRDE------RLNKATVEVLVQPVS 53
Query: 499 PRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASV 648
+ + +S + L AI YPR+ I + I +++ DG A+V
Sbjct: 54 GVAETLEKMISSRIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAV 103
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 33.1 bits (72), Expect = 0.036
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 415 KSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLR-QALTAAIKTEMYPRSP 591
K + + +V CQ+S TFST + + KSQ +S H +T + E+ P
Sbjct: 1990 KDLVDNKQSLVTCQHSDNTFSTPACRFAANAELKSQTISNHYPFMHITISALLEVKNLLP 2049
Query: 592 IDIYIXVLQAD 624
ID+ I ++ D
Sbjct: 2050 IDLNIRIIDKD 2060
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 265 QGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
+GLRLDGR+ ++ R + + G + G + G+T+V+A +
Sbjct: 21 KGLRLDGRQLSDFRSLEIQFG---KEYGQVDVSFGHTRVMARI 60
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 2.4
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
Frame = +1
Query: 175 KTIQHIEQFIIF*CVFVRS*IMPAADL--LSSQGLRLDGRRPNELRRIRCKLGVFTQPDG 348
KT+ ++Q +F + I P L L +Q +R DGR +E R I + +G
Sbjct: 2 KTVSGVKQLSFTPSIFKK--ITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANG 59
Query: 349 SAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEM 528
SA + G + + E +V ++ + + K P D +Q +
Sbjct: 60 SAIIRAGENVFVCGIKAEIAEPFENSPNEGWIVP-NLELSPLCSSKFKPGPPSD-LAQVV 117
Query: 529 SMHLRQAL 552
S L Q L
Sbjct: 118 SQELHQTL 125
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 257 SRVKDYVLTGGDPMNYVG 310
+++KDY ++ GDP+N+ G
Sbjct: 618 AKLKDYYVSQGDPVNFFG 635
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 104 LIIHESWLWTLWLL 63
+++ ESW W WLL
Sbjct: 233 MVVAESWRWQFWLL 246
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 316 CKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA 411
C G FT+ D S + +Q LA+VY H A
Sbjct: 111 CIPGFFTELDPSVFEKQMRQNYLASVYVCHAA 142
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 496 RPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIY 603
R RG + H+ + T++ +MY R+P+D Y
Sbjct: 128 RGRGIDVNSSHYPHISRPRTSSDSQKMYTRAPVDYY 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,414
Number of Sequences: 5004
Number of extensions: 47577
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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