Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D14
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41)         172   2e-43
SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)          45   6e-05
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              31   1.1  
SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)                   29   2.5  
SB_51011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 28   7.6  

>SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41)
          Length = 247

 Score =  172 bits (419), Expect = 2e-43
 Identities = 79/139 (56%), Positives = 106/139 (76%), Gaps = 1/139 (0%)
 Frame = +1

Query: 238 MPAADLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQA-S 414
           M   ++LS +GLR+DGR+ +ELR++ CK+GV +Q DGSAY+E GNTK LA VYGPH+  +
Sbjct: 1   MAGLEVLSPEGLRIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQN 60

Query: 415 KSKMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPI 594
           K+K   + V++N Q+ MATFSTGERK +PRGDRK+ E+SM +R+   AAI   +YPRS I
Sbjct: 61  KAKALHDRVLLNVQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQI 120

Query: 595 DIYIXVLQADGGTYCASVN 651
           DIY+ VLQADGG + A +N
Sbjct: 121 DIYVQVLQADGGNHVACIN 139


>SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)
          Length = 376

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
 Frame = +1

Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVY--GPHQASKSK 423
           +++  +G RLDGR+  E+R I C++       GSA   +G T+ LA V      +A++  
Sbjct: 188 NVILEKGTRLDGRKTTEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLGTSREANQID 247

Query: 424 MSTE--AVVVNCQYSMATFSTGERKNRP-RGDRKSQEMSMHLRQALTAAIKTEMYPRSPI 594
           + +E         Y+   FSTGE   RP RG  + +    +L Q    A+K  +    P 
Sbjct: 248 LPSEQGEETFYLHYNFPPFSTGEA--RPLRGTSRREVGHGNLAQ---RALKNMIPADCPY 302

Query: 595 DIYI--XVLQADGGTYCASV 648
            + +   VL+++G +  A+V
Sbjct: 303 TVRVVSEVLESNGSSSMATV 322


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTK 378
           R DGR+ +ELR I C + ++    GS+  ++G T+
Sbjct: 295 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGETQ 329


>SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)
          Length = 347

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +1

Query: 253 LLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMST 432
           L+   G R DGRRP+ELR +    G+       A        +++A    H +S S  + 
Sbjct: 29  LIRKDGCRQDGRRPDELRPMSLSAGIICASVALAMAGIEMLDLVSACTMIHSSSASGHTM 88

Query: 433 EAVVVNCQYSMATFSTGE 486
            A++ +          GE
Sbjct: 89  VAILPSLNVVSGLVQEGE 106


>SB_51011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 418 SKMSTEAVV-VNCQYSMATFSTGERKNRPRGDRKSQEMSMH 537
           SK+  + VV +NC +S   FSTG R+ +    +K ++   H
Sbjct: 65  SKLCRQRVVDINCNFSRMKFSTGSRRQQTTQRKKLRKYRDH 105


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 259 SSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
           + Q  R DGR   + R    + G+ +   GSA L   +T +L  V
Sbjct: 18  AEQDYRSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGV 62


>SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 231 TSNKNTLKNNELFNMLNCFVKNICFLLCY--IIIVDSVFKIRG 109
           T+N + +   E+      FV  +CF+ C+  I+I+D V   RG
Sbjct: 221 TNNNSNVSVEEIKITRTLFVVVVCFMFCWSPILIIDLVDTFRG 263


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 349 SAYLEQGNTKVLAAVYGPHQASKS 420
           +A+L+ GN+ +LAA +  HQ +K+
Sbjct: 38  NAFLDDGNSPILAARFDTHQGNKT 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,414
Number of Sequences: 59808
Number of extensions: 351293
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)