Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D14
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical pr...   140   1e-33
Z49909-6|CAA90109.1|  214|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AY303579-1|AAP57301.1|  214|Caenorhabditis elegans cell death-re...    56   2e-08
AC006815-1|AAL32260.1|  241|Caenorhabditis elegans Arp2/3 comple...    48   8e-06
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    37   0.011
U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical p...    29   2.9  
AF000264-5|AAC71122.1|  207|Caenorhabditis elegans Hypothetical ...    28   5.0  

>Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical
           protein B0564.1a protein.
          Length = 240

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/134 (49%), Positives = 86/134 (64%)
 Frame = +1

Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMS 429
           +++S  G R+DGRRP ++R I  +LG+    +GS YLE GNTKVL AVYGP++   SK  
Sbjct: 2   NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61

Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
            +   + CQYS   FS  ERKNR RGDRKS E+S  L +A  + I TE +PRS +DI+  
Sbjct: 62  EDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCE 121

Query: 610 VLQADGGTYCASVN 651
           V+Q DG    A VN
Sbjct: 122 VIQGDGSNLAACVN 135


>Z49909-6|CAA90109.1|  214|Caenorhabditis elegans Hypothetical
           protein C14A4.5 protein.
          Length = 214

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 36/117 (30%), Positives = 55/117 (47%)
 Frame = +1

Query: 301 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFST 480
           LR +RC+L      DGSA   QG T + A+  GP     SK S EA+ ++  Y       
Sbjct: 5   LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY------- 57

Query: 481 GERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
             R N   GD K   ++  +   L+ AI  E++P + I + +  +Q DG     ++N
Sbjct: 58  --RAN--CGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAIN 110


>AY303579-1|AAP57301.1|  214|Caenorhabditis elegans cell
           death-related nuclease 5 protein.
          Length = 214

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 36/117 (30%), Positives = 55/117 (47%)
 Frame = +1

Query: 301 LRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATFST 480
           LR +RC+L      DGSA   QG T + A+  GP     SK S EA+ ++  Y       
Sbjct: 5   LREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISY------- 57

Query: 481 GERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCASVN 651
             R N   GD K   ++  +   L+ AI  E++P + I + +  +Q DG     ++N
Sbjct: 58  --RAN--CGDNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAIN 110


>AC006815-1|AAL32260.1|  241|Caenorhabditis elegans Arp2/3 complex
           component protein 4 protein.
          Length = 241

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
 Frame = +1

Query: 286 RRPNELRRIRC-KLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYS 462
           +R N   R  C K GVF   DGS Y E GNT+VLA + GP    K +     + +     
Sbjct: 31  KRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPDGDGKWEEDRAKITI----- 85

Query: 463 MATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGTYCA 642
                  E K       K  E    L  A++A I    YP   I+I I VL  DGG    
Sbjct: 86  -------ELKG-IEDSVKVAEYRAQLASAVSAVIFASKYPGKVIEIEITVLSDDGGVLST 137

Query: 643 SVN 651
           +++
Sbjct: 138 ALS 140


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +1

Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
           G+R DGRRP+E R I   + ++ +  G +  ++G T+V++ V
Sbjct: 332 GIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTV 373


>U00033-15|AAC48298.2|  434|Caenorhabditis elegans Hypothetical
           protein F37C12.13a protein.
          Length = 434

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = +1

Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVV 447
           G R D R   E R ++  +G      G+A    GNTKV+AAV     A  S M     V+
Sbjct: 21  GKRFDFRSLEEFRDVKLVVGAEV---GTAICTIGNTKVMAAV-SAEIAEPSSMRPHKGVI 76

Query: 448 NCQYSMA 468
           N    ++
Sbjct: 77  NIDVDLS 83


>AF000264-5|AAC71122.1|  207|Caenorhabditis elegans Hypothetical
           protein F43E2.5 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 257 SRVKDYVLTGGDPMN 301
           ++VKDY L+GGDP N
Sbjct: 190 NKVKDYALSGGDPRN 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,837
Number of Sequences: 27780
Number of extensions: 273624
Number of successful extensions: 681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)