Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D14
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   1.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 384 CSRVWTPSGFKIEDVDRSCSC 446
           CS     SG KI  ++RSC C
Sbjct: 57  CSSYLQVSGSKIWQMERSCMC 77


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 216 TLKNNELFNMLNCFVKNICFLLCYIIIVDSVFKIRGDSN 100
           TL+N+E+ +    F  N+  L C I  V  + K +G +N
Sbjct: 99  TLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKKKGINN 137


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 144 YNIVKSKYF*QNNSTY*TIHYFLM 215
           YNI+  +++  N++TY T+   LM
Sbjct: 235 YNILLRRHYSMNSTTYVTLTIVLM 258


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 210 KNNELFNMLNCFVKNICFLLC 148
           K  ELF  + CFV  +  L C
Sbjct: 413 KRKELFIAIVCFVSYLIGLFC 433


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 210 KNNELFNMLNCFVKNICFLLC 148
           K  ELF  + CFV  +  L C
Sbjct: 466 KRKELFIAIVCFVSYLIGLFC 486


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,747
Number of Sequences: 438
Number of extensions: 3786
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)