Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P02_F_D14
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to ... 140 7e-34
At4g27490.1 68417.m03949 3' exoribonuclease family domain 1-cont... 68 5e-12
At3g46210.1 68416.m05002 3' exoribonuclease family domain 1-cont... 62 3e-10
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 46 3e-05
At3g07750.2 68416.m00940 3' exoribonuclease family domain 1-cont... 37 0.013
At3g07750.1 68416.m00939 3' exoribonuclease family domain 1-cont... 37 0.013
At1g60080.1 68414.m06769 3' exoribonuclease family domain 1-cont... 35 0.041
At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransfera... 35 0.054
At2g07110.1 68415.m00813 hypothetical protein 29 3.6
At2g41440.1 68415.m05120 expressed protein 28 6.2
At1g55440.1 68414.m06341 DC1 domain-containing protein contains ... 27 8.2
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch... 27 8.2
At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha ch... 27 8.2
>At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to
exonuclease RRP41 [Arabidopsis thaliana] GI:6164938
Length = 241
Score = 140 bits (339), Expect = 7e-34
Identities = 72/137 (52%), Positives = 100/137 (72%), Gaps = 3/137 (2%)
Frame = +1
Query: 250 DLLSSQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQ---ASKS 420
+ ++ +GLRLDGRR NE+R+I ++GV ++ DGSA E GNTKV+AAVYGP + S+
Sbjct: 2 EYVNPEGLRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQ 61
Query: 421 KMSTEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDI 600
K + AVV+ C+YSMA FSTG+R+ R + DR+S E+S+ +RQ + A I TE+ P S IDI
Sbjct: 62 KKNDHAVVL-CEYSMAQFSTGDRR-RQKFDRRSTELSLVIRQTMEACILTELMPHSQIDI 119
Query: 601 YIXVLQADGGTYCASVN 651
++ VLQADGGT A +N
Sbjct: 120 FLQVLQADGGTRSACIN 136
>At4g27490.1 68417.m03949 3' exoribonuclease family domain
1-containing protein contains Pfam PF01138: 3'
exoribonuclease family, domain 1
Length = 256
Score = 68.1 bits (159), Expect = 5e-12
Identities = 38/118 (32%), Positives = 63/118 (53%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR ++ R + G + GSAY E GNTKV+ +V+GP ++ K+ + ++ +NC
Sbjct: 34 RPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 93
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADG 627
S F++ D K E S L +AL I E +P++ +D++ VL++ G
Sbjct: 94 NVSYTNFASPTLGQGT--DHK--EYSSMLHKALEGVIMMETFPKTTVDVFALVLESGG 147
>At3g46210.1 68416.m05002 3' exoribonuclease family domain
1-containing protein similar to SP|Q9NQT4 Exosome
complex exonuclease RRP46 (EC 3.1.13.-) (Ribosomal RNA
processing protein 46) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 239
Score = 62.1 bits (144), Expect = 3e-10
Identities = 38/126 (30%), Positives = 59/126 (46%)
Frame = +1
Query: 274 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNC 453
R DGR PN+LR + C + +P GSA QG+TKVLAAVYGP +K + E
Sbjct: 5 REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 58
Query: 454 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
A F + + + +E M L++ + + + P + + I V+ DG
Sbjct: 59 ---KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSL 115
Query: 634 YCASVN 651
++N
Sbjct: 116 LPCAIN 121
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 45.6 bits (103), Expect = 3e-05
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVY--GPHQASK--SKMS 429
S G R+DGR +E+R I C+ GSA +G+T+VL V P +A S +
Sbjct: 360 SDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVG 419
Query: 430 TEAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIX 609
YS + T E R +R+ +AL A + E I I
Sbjct: 420 PPKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINSE 479
Query: 610 VLQADGGTYCASV 648
V+ +DG T ASV
Sbjct: 480 VMSSDGSTSMASV 492
>At3g07750.2 68416.m00940 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 36.7 bits (81), Expect = 0.013
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV---YGPHQASKSKMST 432
+Q LR DGR+ R I + GV Q +GSA + G T V+A+V G + +
Sbjct: 16 AQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGK 75
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQAL 552
AV ++C A + G R G+ S E+++ L++ L
Sbjct: 76 VAVFIDCS-PTAEPTFGGR----GGEELSSELALALQRCL 110
>At3g07750.1 68416.m00939 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 36.7 bits (81), Expect = 0.013
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV---YGPHQASKSKMST 432
+Q LR DGR+ R I + GV Q +GSA + G T V+A+V G + +
Sbjct: 16 AQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGK 75
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQAL 552
AV ++C A + G R G+ S E+++ L++ L
Sbjct: 76 VAVFIDCS-PTAEPTFGGR----GGEELSSELALALQRCL 110
>At1g60080.1 68414.m06769 3' exoribonuclease family domain
1-containing protein similar to SP|Q96B26 Exosome
complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA
processing protein 43) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 302
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +1
Query: 262 SQGLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV 393
S+ LR DGR+ + R LG+ + DGSA + G+T +LAA+
Sbjct: 33 SESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAI 76
>At3g03710.1 68416.m00375 polyribonucleotide nucleotidyltransferase,
putative similar to polynucleotide phosphorylase
GB:AAC50039 [Pisum sativum], identical to putative
polynucleotide phosphorylase GB:AAF00646 [Arabidopsis
thaliana]
Length = 922
Score = 34.7 bits (76), Expect = 0.054
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Frame = +1
Query: 268 GLRLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAV-YGPHQASKS----KMST 432
G R DGR +E+R I + G+ + GS +G T+ LA V G Q ++ + S
Sbjct: 445 GKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSD 504
Query: 433 EAVVVNCQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXV 612
E QY+ S GE R+ +AL + ++ I + V
Sbjct: 505 EYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTV 564
Query: 613 LQADGGTYCASV 648
++++G + ASV
Sbjct: 565 IESNGSSSMASV 576
>At2g07110.1 68415.m00813 hypothetical protein
Length = 150
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +1
Query: 352 AYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMA--------TFSTGERKNRPRG 507
+++ +TKVL+A YGP +K + E + S+ FS ER R
Sbjct: 18 SFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFSFSERGLFCRL 77
Query: 508 DRKSQEMSMHLRQALTAAIKTEMYPRSPIDIYIXVLQADGGT 633
+ +E L++ L + + P + + I V+ DGG+
Sbjct: 78 RKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVH-DGGS 118
>At2g41440.1 68415.m05120 expressed protein
Length = 544
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +1
Query: 349 SAYLEQGNTKVLAAVYGPHQASKSKMST-----EAVVVNCQYSMATFSTGERKNRPRGDR 513
S LEQ L PH+ K V+V C++S + S GER+ P G+
Sbjct: 152 SIVLEQKKEVELEEAERPHKQKKEAEHDADGMRRGVLVPCKFSAS--SLGERQEDPNGEA 209
Query: 514 KSQEMSMHLRQALTAAIKTE 573
+M Q + ++++E
Sbjct: 210 PLLQMQREFEQRSSESLQSE 229
>At1g55440.1 68414.m06341 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 516 LAVPARSVLSFTC*ECSHTV 457
L++ RS L +TC CSHTV
Sbjct: 218 LSLSTRSTLLYTCLPCSHTV 237
>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 734
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 322 LGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATF 474
LGV QPDGS +E+GN + +A K EA ++ S+A +
Sbjct: 568 LGVRYQPDGSYLIEEGNDSP-SLELRVTRAGKCDFRVEAAGLSMNVSLAAY 617
>At1g03090.1 68414.m00283 methylcrotonyl-CoA carboxylase alpha
chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
1 (MCCA) nearly identical to SP|Q42523
Methylcrotonyl-CoA carboxylase alpha chain,
mitochondrial precursor (EC 6.4.1.4)
(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
alpha subunit) {Arabidopsis thaliana}
Length = 714
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 322 LGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSTEAVVVNCQYSMATF 474
LGV QPDGS +E+GN + +A K EA ++ S+A +
Sbjct: 548 LGVRYQPDGSYLIEEGNDSP-SLELRVTRAGKCDFRVEAAGLSMNVSLAAY 597
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,848
Number of Sequences: 28952
Number of extensions: 241123
Number of successful extensions: 554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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