Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D13
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   4.8  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    26   4.8  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.3  

>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 195 VIAVMLVGFIQIDILHPVSWISSS 266
           VIA+ +VG +++ I+    WIS S
Sbjct: 414 VIALSIVGILELKIVMATDWISQS 437


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 233 YSSSRILDIVIYK*CIWLENXHKYRIAWTRVFF 331
           Y+S+R+L   + K  + LE  ++YRIA+   FF
Sbjct: 393 YASTRVLINGLVKGGVPLEKIYRYRIAFRGKFF 425


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 303 IVLLGLVSFFQAYIYGCYYVKPLPKYFTRF 392
           ++L+GL S +  ++Y   + KP+  + +R+
Sbjct: 454 VLLMGLFSMYVGFVYNDLFSKPMSIFSSRW 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,437
Number of Sequences: 5004
Number of extensions: 49924
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)