Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D13
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0073 - 14333096-14333290,14333377-14333638,14333811-143339...    28   6.5  
11_04_0112 - 13585293-13585988,13586095-13586619                       27   8.5  

>09_04_0073 -
           14333096-14333290,14333377-14333638,14333811-14333965,
           14334039-14334147,14335094-14335131
          Length = 252

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +3

Query: 303 IVLLGLVSFFQAYIYGCYYVKPLPKYF 383
           I LLGL  FFQA I G    KP P  F
Sbjct: 142 ISLLGLTDFFQAVIVGGECEKPKPAPF 168


>11_04_0112 - 13585293-13585988,13586095-13586619
          Length = 406

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 284 LENXHKYRIAWTRVFFSGLY-LRLLLRKAT 370
           ++  +  RIA TRV + GLY L ++L KAT
Sbjct: 314 MDKNNSIRIAPTRVMYHGLYILMMMLTKAT 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,289
Number of Sequences: 37544
Number of extensions: 259191
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)