Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D13
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   31   0.53 
SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_53805| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)           28   4.9  
SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)                28   4.9  
SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              28   6.5  
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 429  IFSILYALSG-YFTMSLYSSLAKSNFNTLXKICXNYDGQCLLKQSLXYKWV 578
            IF +++ L G +F ++L+  +   NFNTL +      G  +L      KWV
Sbjct: 2309 IFFVIFILIGAFFVLNLFVGVIIDNFNTLKRKYDELSGMGMLLTERQRKWV 2359


>SB_27030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 224 YETHQHNSNNSLQSYIPQNRYNKSF*KNITRY 129
           Y   QH++NN +QS+  +   NK++ + I RY
Sbjct: 196 YRMLQHHTNNQIQSHESETASNKAYRREIRRY 227


>SB_53805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 141 YHTLHPXCRLLNFITKFKXME*AGKY 64
           Y+ L P CR LNF+  FK +  +G Y
Sbjct: 103 YYFLDPECRKLNFMIYFKGVFTSGSY 128


>SB_3393| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.012)
          Length = 626

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 432 FSILYALSGYFTMSLYSSLAKSNFNTLXKICXNYDGQCLLKQSLXYKWV 578
           F +   +  +F ++L+  +   NFNTL K     +   +L      KWV
Sbjct: 70  FVVFIIVGSFFVLNLFVGVIIDNFNTLKKKYEEINSMGMLLTESQRKWV 118


>SB_47744| Best HMM Match : RrnaAD (HMM E-Value=5.2e-06)
          Length = 401

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 363 KPLPKYFTRFSMFLSLFCTQNII 431
           +P  KY+ R S+  SLFC  N+I
Sbjct: 229 QPGTKYYNRLSIMASLFCDVNVI 251


>SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 31/152 (20%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
 Frame = +3

Query: 129 VTCDIFSKRLIISVLWN----IGLQAVIAVMLVGFIQIDILHP-VSWISSSINDVFGWKM 293
           VT D+     I+ +L+     + L   +  +++ F  I+   P ++ +  S+N   G   
Sbjct: 178 VTLDLMDSIDILEILFLKDAIVDLPVALENIIIAFACINFFLPTLALLELSVNKFDGQVR 237

Query: 294 XINIVLLGLVSFFQAYIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFTM- 470
            ++  +L  +S+        + ++    +   FS  +S+F  +NII +++Y++  Y ++ 
Sbjct: 238 SVSFQILYSLSYIGLVNVPFWIIRVYIWWV--FSQDVSVFIAKNIIMTVIYSMDIYESLT 295

Query: 471 SLYSSLAKSNFNTLXKIC-XNYDGQCLLKQSL 563
           S      +   N+  K C  ++  QC   +SL
Sbjct: 296 SERPRKCEICGNSFLKSCFEDHINQCKKPESL 327


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/92 (20%), Positives = 39/92 (42%)
 Frame = +2

Query: 158  YYICFVEYRTASCYCCYVGGFHTN*YSSSRILDIVIYK*CIWLENXHKYRIAWTRVFFSG 337
            Y +    Y +  C C Y+     + Y+SS    I  +  C+++ + +        ++   
Sbjct: 1523 YVVIVSGYTSIHCQCVYI--VIVSAYTSSLPERIRRHCQCVYIVSAYTSNCQCVYIYTLS 1580

Query: 338  LYLRLLLRKATTKVFYQVLYVPEFILHSKYYI 433
            + +RL +  A T +  Q +YV    +  + YI
Sbjct: 1581 VRIRLYIVSAYTSIHCQCVYVYTLSVRIRLYI 1612


>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 826

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/116 (20%), Positives = 46/116 (39%)
 Frame = +3

Query: 129 VTCDIFSKRLIISVLWNIGLQAVIAVMLVGFIQIDILHPVSWISSSINDVFGWKMXINIV 308
           V C +     I ++  + G    + V     I + + +P+S   + +     W +   + 
Sbjct: 113 VWCKMLPTLQITNISASTGSLVAMTVERYRAICMPMSNPISRTHAKLAIALAWMVGFFVA 172

Query: 309 LLGLVSFFQAYIYGCYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFTMSL 476
           L  + ++     YGC    P+P+    +SMFL +      +  +L  L  Y  M L
Sbjct: 173 LPEVGAYTLTGEYGCGEQWPIPELQKIYSMFLFIAI---YVVPLLMLLPAYIRMIL 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,511
Number of Sequences: 59808
Number of extensions: 336401
Number of successful extensions: 568
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)