Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D13
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +3

Query: 195 VIAVMLVGFIQIDILHPVSWISSSINDV------FGWKMXINIVLLGLVS 326
           ++A  LV  I   IL P  ++    +DV      FGW+M   IV++ LVS
Sbjct: 364 IVATHLVCGILGSILVPFFYVQED-DDVKLVLLNFGWQMICLIVVIALVS 412


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 77  RPVSTKLSRNVTVIFILI 24
           RP+  KLSR   ++FI++
Sbjct: 151 RPLDGKLSRGQVILFIVL 168


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 270 NDVFGWKMXINIVLLGLVSFFQ 335
           ++V  WK   +I LLGL    Q
Sbjct: 103 DEVLDWKKIFDINLLGLTCMIQ 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,834
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)