Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D13
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58340.1 68414.m06636 MATE efflux protein-related contains Pf...    29   3.1  
At1g40133.1 68414.m04768 hypothetical protein                          29   3.1  
At5g31685.1 68418.m03766 expressed protein ; expression supporte...    28   4.1  
At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger) fa...    28   4.1  
At5g08580.1 68418.m01021 calcium-binding EF hand family protein ...    27   7.1  
At4g14920.1 68417.m02292 PHD finger transcription factor, putative     27   7.1  
At4g32320.1 68417.m04597 peroxidase family protein similar to L-...    27   9.4  
At2g38740.1 68415.m04757 haloacid dehalogenase-like hydrolase fa...    27   9.4  

>At1g58340.1 68414.m06636 MATE efflux protein-related contains Pfam
           profile: PF01554 uncharacterized membrane protein family
           UPF0013
          Length = 532

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 159 IISVLWNIGLQAVIAVMLVGFIQIDILHPVSWISSSINDVFGWKMXINIVLLGLVS 326
           I  VL N+ L     V+L  F+    +H  +W+  +I+ + GW   +++ +   VS
Sbjct: 242 IAMVLTNLNL----VVLLSSFVYFTSVHSDTWVPITIDSLKGWSALLSLAIPTCVS 293


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 315 GLVSFFQAYIYGCYYVKPLPK----YFTRFSMFLSLFCTQNI 428
           G  + ++ +IYGC+   P+P+    Y T + + LS    Q++
Sbjct: 140 GFYTLYEGFIYGCFLWLPVPRLVLEYVTSYQIALSQITMQSL 181


>At5g31685.1 68418.m03766 expressed protein ; expression supported
           by MPSS
          Length = 519

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +3

Query: 315 GLVSFFQAYIYGCYYVKPLPK----YFTRFSMFLSLFCTQNIIFSILYALSGYFTMSLYS 482
           G ++ ++ + Y C+   P+P+    Y T + + LS    Q++   I   + GY T S  +
Sbjct: 174 GFLTLYEGFFYLCFLWLPVPRLILDYVTSYQIALSQITAQSLRHLIGILVRGYETESEVT 233

Query: 483 SLAKSNFNTLXKI 521
                N+  + ++
Sbjct: 234 LAHLQNYLEIRRV 246


>At2g01735.1 68415.m00102 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger) domain
          Length = 359

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 144 FSKRLIIS-VLWNIGLQAVIAVMLVGFIQIDILHPVS-WISSSINDVFGWKMXINIVLL 314
           +SK ++ + +LWN  L    AVMLVG ++     P+  WI      V+G +   ++VL+
Sbjct: 73  YSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIRVWIC-----VYGLQCLFHVVLV 126


>At5g08580.1 68418.m01021 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 391

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 216 GFIQIDILHPVSWISSSINDVFGWKM 293
           GFI      P SW+  S N+ FG+ M
Sbjct: 186 GFISFSEYEPPSWVRKSDNNSFGYDM 211


>At4g14920.1 68417.m02292 PHD finger transcription factor, putative
          Length = 1055

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 FCTQNIIFSILYALSGYFTMSLYSSLAKSNFNTL 512
           FC +N    I + +S  + + LY +  +SNFN L
Sbjct: 809 FCLRNFTTVIFFGISLCWFVCLYIAFRRSNFNRL 842


>At4g32320.1 68417.m04597 peroxidase family protein similar to
           L-ascorbate peroxidase [Arabidopsis thaliana]
           gi|1523789|emb|CAA66925; contains Pfam profile PF00141:
           Peroxidase
          Length = 329

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 NIGLQAVIAVMLVGFIQIDILHPVSW 254
           NIGL+  + V+    +++D + PVSW
Sbjct: 150 NIGLKKSLKVLAKAKVKVDEIQPVSW 175


>At2g38740.1 68415.m04757 haloacid dehalogenase-like hydrolase
           family protein similar to SP|P71447
           Beta-phosphoglucomutase (EC 5.4.2.6) {Lactococcus
           lactis}; contains InterPro accession IPR005834: Haloacid
           dehalogenase-like hydrolase
          Length = 244

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 312 LGLVSFFQAYIYG--CYYVKPLPKYFTRFSMFLSLFCTQNIIF 434
           LGL  FFQA I G  C + KP P  + +    L++     ++F
Sbjct: 145 LGLTDFFQAVILGSECEFPKPHPGPYLKALEVLNVSKEHTLVF 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,220
Number of Sequences: 28952
Number of extensions: 233420
Number of successful extensions: 419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)