Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D12
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    28   0.76 
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   3.1  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    25   7.1  

>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
 Frame = +3

Query: 144 LRVVDNSEIGM----RAMAEGK----PPKVICVYNKQRVGFIGDRVMVAIKGQKXKGILV 299
           L+V+DNS   +    R +  GK      +V+ V  K R G          +G     I+V
Sbjct: 8   LKVIDNSGATLAECIRVVRAGKFASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIV 67

Query: 300 GLKQTQKV---KVPKFDSNNIXLIXDNGTPLGTRIHVPIPTILRT 425
             K   +    +  +FD N   L+     PLGTRI   +   LRT
Sbjct: 68  RTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANELRT 112


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 213 CVYNKQRVGFIGD 251
           CVY KQRV FIGD
Sbjct: 145 CVYLKQRVSFIGD 157


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 84  ELTCGFHTTACLNEVRLLTRLRVVDNS 164
           +L   FH+   LNE++L   L+V+ N+
Sbjct: 313 KLGSAFHSLTALNEIQLANHLQVIANA 339


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 123 EVRLLTRLRVVDNSEIGMRAMAEGKPPKVICVYNKQRV 236
           E  L   L++ D  E+    +A+G+ P  + V NKQ +
Sbjct: 85  ENNLQKPLKISDLQELVFWCLADGQAPSWVLVRNKQMI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,655
Number of Sequences: 5004
Number of extensions: 39083
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)