Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P02_F_D12
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845     31   0.58 
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    31   0.77 
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    31   0.77 
10_06_0149 + 11264263-11264547,11264664-11264972                       28   5.4  
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364...    27   7.2  
08_01_0775 - 7531397-7531564,7531590-7532771                           27   9.5  

>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
          Length = 170

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 333 KFDSNNIXLIXDNGTPLGTRIHVPIPTILR 422
           +FD N I L+ + G  +GTR+  P+P  LR
Sbjct: 126 QFDDNAIVLVNNKGELIGTRVFGPVPHELR 155


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 120 NEVRLLTRLRVVDNSEIGMRA-MAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQKXKGIL 296
           + V+L TRLRV++  E+G  A   +GKP   I VY K R    G  +  A        ++
Sbjct: 386 SRVKLETRLRVLEGKELGRSAGSTKGKPK--IEVYEKDRKKGAGALITPAKTYNPAADLV 443

Query: 297 VGLKQTQKVKVPK 335
           +G    +  K P+
Sbjct: 444 LGQSTEETPKKPE 456


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 120 NEVRLLTRLRVVDNSEIGMRA-MAEGKPPKVICVYNKQRVGFIGDRVMVAIKGQKXKGIL 296
           + V+L TRLRV++  E+G  A   +GKP   I VY K R    G  +  A        ++
Sbjct: 386 SRVKLETRLRVLEGKELGRSAGSTKGKPK--IEVYEKDRKKGAGALITPAKTYNPAADLV 443

Query: 297 VGLKQTQKVKVPK 335
           +G    +  K P+
Sbjct: 444 LGQSTEETPKKPE 456


>10_06_0149 + 11264263-11264547,11264664-11264972
          Length = 197

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 227 TTCRLYW*QSNGSYQRAKEXRHSCRSQANTKGQSTKVRQQQ 349
           TT  ++   ++ S +RA+  R +CR  AN KG+S  V + Q
Sbjct: 12  TTSNIHGSMAHAS-RRARRWRCTCRRSANCKGKSKFVLEHQ 51


>12_01_0465 +
           3640736-3640817,3640898-3641088,3641266-3641789,
           3643726-3644029
          Length = 366

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 374 SVVXY*XYVVAVELWYFDLLCLLETYKNAFXLLPFDSYHY 255
           S V Y  YV+     YFD    LE+Y N   ++  DSY +
Sbjct: 31  SYVSYDRYVLDTSEVYFDDCIPLESYLNIRPMVTSDSYQF 70


>08_01_0775 - 7531397-7531564,7531590-7532771
          Length = 449

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 534 IYXNLLTMYLEIKQ-IWWL-WPVVLC 463
           I+     MYL++K+  WW  WP V+C
Sbjct: 377 IHPGSTKMYLDLKEKYWWSSWPFVMC 402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,393
Number of Sequences: 37544
Number of extensions: 228701
Number of successful extensions: 421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)